PRGDB00000036 (Cf-9)
| Cf-9 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 2792183 (AJ002236) |
| Gene Class | RLP |
| Domain Type | LRR, LRR, LRR, LRR, LRR, Ser-Thr Kinase |
| Chromosome | 1 |
| Gene Species | Solanum pimpinellifolium |
DNA Sequence
ATGGATTGTGTAAAACTTGTATTCCTTATGCTATATACCTTTCTCTGTCAACTTGCTTTATCCTCATCCTTGCCTCATTTGTGCCCCGAAGATCAAGCTCTTTCTCTTCTACAATTCAAGAACATGTTTACCATTAATCCTAATGCTTCTGATTATTGTTACGACATAAGAACATACGTAGACATTCAGTCATATCCAAGAACTCTTTCTTGGAACAAAAGCACAAGTTGCTGCTCATGGGATGGCGTTCATTGTGACGAGACGACAGGACAAGTGATTGCGCTTGACCTCCGTTGCAGCCAACTTCAAGGCAAGTTTCATTCCAATAGTAGCCTCTTTCAACTCTCCAATCTCAAAAGGCTTGATTTGTCTTTTAATAATTTCACTGGATCACTCATTTCACCAAAATTTGGTGAGTTTTCAAATTTGACGCATCTCGATTTGTCGCATTCTAGTTTTACAGGTCTAATTCCTTCTGAAATCTGTCACCTTTCTAAACTACACGTTCTTCGTATATGTGATCAATATGGGCTTAGTCTTGTACCTTACAATTTTGAACTGCTCCTTAAGAACTTGACCCAATTAAGAGAGCTCAACCTTGAATCTGTAAACATCTCTTCCACTATTCCTTCAAATTTCTCTTCTCATTTAACAACTCTACAACTTTCAGGCACAGAGTTACATGGGATATTGCCCGAAAGAGTTTTTCACCTTTCCAACTTACAATCCCTTCATTTATCAGTCAATCCCCAGCTCACGGTTAGGTTTCCCACAACCAAATGGAATAGCAGTGCATCACTCATGACGTTATACGTCGATAGTGTGAATATTGCTGATAGGATACCTAAATCATTTAGCCATCTAACTTCACTTCATGAGTTGTACATGGGTCGTTGTAATCTGTCAGGGCCTATTCCTAAACCTCTATGGAATCTCACCAACATAGTGTTTTTGCACCTTGGTGATAACCATCTTGAAGGACCAATTTCCCATTTCACGATATTTGAAAAGCTCAAGAGGTTATCACTTGTAAATAACAACTTTGATGGCGGACTTGAGTTCTTATCCTTTAACACCCAACTTGAACGGCTAGATTTATCATCCAATTCCCTAACTGGTCCAATTCCATCCAACATAAGCGGACTTCAAAACCTAGAATGTCTCTACTTGTCATCAAACCACTTGAATGGGAGTATACCTTCCTGGATATTCTCCCTTCCTTCACTGGTTGAGTTAGACTTGAGCAATAACACTTTCAGTGGAAAAATTCAAGAGTTCAAGTCCAAAACATTAAGTGCCGTTACTCTAAAACAAAATAAGCTGAAAGGTCGTATTCCGAATTCACTCCTAAACCAGAAGAACCTACAATTACTTCTCCTTTCACACAATAATATCAGTGGACATATTTCTTCAGCTATCTGCAATCTGAAAACATTGATATTGTTAGACTTGGGAAGTAATAATTTGGAGGGAACAATCCCACAATGCGTGGTTGAGAGGAACGAATACCTTTCGCATTTGGATTTGAGCAAAAACAGACTTAGTGGGACAATCAATACAACTTTTAGTGTTGGAAACATTTTAAGGGTCATTAGCTTGCACGGGAATAAGCTAACGGGGAAAGTCCCACGATCTATGATCAATTGCAAGTATTTGACACTACTTGATCTAGGTAACAATATGTTGAATGACACATTTCCAAACTGGTTGGGATACCTATTTCAATTGAAGATTTTAAGCTTGAGATCAAATAAGTTGCATGGTCCCATCAAATCTTCAGGGAATACAAACTTGTTTATGGGTCTTCAAATTCTTGATCTATCATCTAATGGATTTAGTGGGAATTTACCCGAAAGAATTTTGGGGAATTTGCAAACCATGAAGGAAATTGATGAGAGTACAGGATTCCCAGAGTATATTTCTGATCCATATGATATTTATTACAATTATTTGACGACAATTTCTACAAAGGGACAAGATTATGATTCTGTTCGAATTTTGGATTCTAACATGATTATCAATCTCTCAAAGAACAGATTTGAAGGTCATATTCCAAGCATTATTGGAGATCTTGTTGGACTTCGTACGTTGAACTTGTCTCACAATGTCTTGGAAGGTCATATACCGGCATCATTTCAAAATTTATCAGTACTCGAATCTTTGGATCTCTCATCTAATAAAATCAGCGGAGAAATTCCGCAGCAGCTTGCATCCCTCACATTCCTTGAAGTCTTAAATCTCTCTCACAATCATCTTGTTGGATGCATCCCCAAAGGAAAACAATTTGATTCGTTCGGGAACACTTCGTACCAAGGGAATGATGGGTTACGCGGATTTCCACTCTCAAAACTTTGTGGTGGTGAAGATCAAGTGACAACTCCAGCTGAGCTAGATCAAGAAGAGGAGGAAGAAGATTCACCAATGATCAGTTGGCAGGGGGTTCTCGTGGGTTACGGTTGTGGACTTGTTATTGGACTGTCCGTAATATACATAATGTGGTCAACTCAATATCCAGCATGGTTTTCGAGGATGGATTTAAAGTTGGAACACATAATTACTACGAAAATGAAAAAGCACAAGAAAAGATATTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cf-9 | Cf-9 [Solanum pimpinellifolium]. | MDCVKLVFLMLYTFLCQLALSSSLPHLCPEDQALSLLQFKNMFTINPNASDYCYDIRTYVDIQSYPRTLSWNKSTSCCSWDGVHCDETTGQVIALDLRCSQLQGKFHSNSSLFQLSNLKRLDLSFNNFTGSLISPKFGEFSNLTHLDLSHSSFTGLIPSEICHLSKLHVLRICDQYGLSLVPYNFELLLKNLTQLRELNLESVNISSTIPSNFSSHLTTLQLSGTELHGILPERVFHLSNLQSLHLSVNPQLTVRFPTTKWNSSASLMTLYVDSVNIADRIPKSFSHLTSLHELYMGRCNLSGPIPKPLWNLTNIVFLHLGDNHLEGPISHFTIFEKLKRLSLVNNNFDGGLEFLSFNTQLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFSGKIQEFKSKTLSAVTLKQNKLKGRIPNSLLNQKNLQLLLLSHNNISGHISSAICNLKTLILLDLGSNNLEGTIPQCVVERNEYLSHLDLSKNRLSGTINTTFSVGNILRVISLHGNKLTGKVPRSMINCKYLTLLDLGNNMLNDTFPNWLGYLFQLKILSLRSNKLHGPIKSSGNTNLFMGLQILDLSSNGFSGNLPERILGNLQTMKEIDESTGFPEYISDPYDIYYNYLTTISTKGQDYDSVRILDSNMIINLSKNRFEGHIPSIIGDLVGLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLSKLCGGEDQVTTPAELDQEEEEEDSPMISWQGVLVGYGCGLVIGLSVIYIMWSTQYPAWFSRMDLKLEHIITTKMKKHKKRY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 4-786 | FAMILY NOT NAMED,FAMILY NOT NAMED | VKLVFLMLYTFLCQLALSSSLPHLCPEDQALSLLQFKNMFTINPNASDYCYDIRTYVDIQSYPRTLSWNKSTSCCSWDGVHCDETTGQVIALDLRCSQLQGKFHSNSSLFQLSNLKRLDLSFNNFTGSLISPKFGEFSNLTHLDLSHSSFTGLIPSEICHLSKLHVLRICDQYGLSLVPYNFELLLKNLTQLRELNLESVNISSTIPSNFSSHLTTLQLSGTELHGILPERVFHLSNLQSLHLSVNPQLTVRFPTTKWNSSASLMTLYVDSVNIADRIPKSFSHLTSLHELYMGRCNLSGPIPKPLWNLTNIVFLHLGDNHLEGPISHFTIFEKLKRLSLVNNNFDGGLEFLSFNTQLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFSGKIQEFKSKTLSAVTLKQNKLKGRIPNSLLNQKNLQLLLLSHNNISGHISSAICNLKTLILLDLGSNNLEGTIPQCVVERNEYLSHLDLSKNRLSGTINTTFSVGNILRVISLHGNKLTGKVPRSMINCKYLTLLDLGNNMLNDTFPNWLGYLFQLKILSLRSNKLHGPIKSSGNTNLFMGLQILDLSSNGFSGNLPERILGNLQTMKEIDESTGFPEYISDPYDIYYNYLTTISTKGQDYDSVRILDSNMIINLSKNRFEGHIPSIIGDLVGLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLSKLCG |
| HMMPanther: PTHR24420:SF473 | 4-786 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | VKLVFLMLYTFLCQLALSSSLPHLCPEDQALSLLQFKNMFTINPNASDYCYDIRTYVDIQSYPRTLSWNKSTSCCSWDGVHCDETTGQVIALDLRCSQLQGKFHSNSSLFQLSNLKRLDLSFNNFTGSLISPKFGEFSNLTHLDLSHSSFTGLIPSEICHLSKLHVLRICDQYGLSLVPYNFELLLKNLTQLRELNLESVNISSTIPSNFSSHLTTLQLSGTELHGILPERVFHLSNLQSLHLSVNPQLTVRFPTTKWNSSASLMTLYVDSVNIADRIPKSFSHLTSLHELYMGRCNLSGPIPKPLWNLTNIVFLHLGDNHLEGPISHFTIFEKLKRLSLVNNNFDGGLEFLSFNTQLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFSGKIQEFKSKTLSAVTLKQNKLKGRIPNSLLNQKNLQLLLLSHNNISGHISSAICNLKTLILLDLGSNNLEGTIPQCVVERNEYLSHLDLSKNRLSGTINTTFSVGNILRVISLHGNKLTGKVPRSMINCKYLTLLDLGNNMLNDTFPNWLGYLFQLKILSLRSNKLHGPIKSSGNTNLFMGLQILDLSSNGFSGNLPERILGNLQTMKEIDESTGFPEYISDPYDIYYNYLTTISTKGQDYDSVRILDSNMIINLSKNRFEGHIPSIIGDLVGLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLSKLCG |
| HMMPfam: PF08263 IPR013210
|
30-86 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
EDQALSLLQFKNMFTINPNASDYCYDIRTYVDIQSYPRTLSWNKSTSCCSWDGVHCD |
| Gene3D: G3DSA:3.80.10.10 | 71-344 | no description | WNKSTSCCSWDGVHCDETTGQVIALDLRCSQLQGKFHSNSSLFQLSNLKRLDLSFNNFTGSLISPKFGEFSNLTHLDLSHSSFTGLIPSEICHLSKLHVLRICDQYGLSLVPYNFELLLKNLTQLRELNLESVNISSTIPSNFSSHLTTLQLSGTELHGILPERVFHLSNLQSLHLSVNPQLTVRFPTTKWNSSASLMTLYVDSVNIADRIPKSFSHLTSLHELYMGRCNLSGPIPKPLWNLTNIVFLHLGDNHLEGPISHFTIFEKLKRLSLV |
| superfamily: SSF52047 | 94-420 | RNI-like,LRR | ALDLRCSQLQGKFHSNSSLFQLSNLKRLDLSFNNFTGSLISPKFGEFSNLTHLDLSHSSFTGLIPSEICHLSKLHVLRICDQYGLSLVPYNFELLLKNLTQLRELNLESVNISSTIPSNFSSHLTTLQLSGTELHGILPERVFHLSNLQSLHLSVNPQLTVRFPTTKWNSSASLMTLYVDSVNIADRIPKSFSHLTSLHELYMGRCNLSGPIPKPLWNLTNIVFLHLGDNHLEGPISHFTIFEKLKRLSLVNNNFDGGLEFLSFNTQLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFS |
| HMMSmart: SM00369 IPR003591
|
115-139 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSNLKRLDLSFNNFTGSLISPKFGE |
| HMMSmart: SM00365 | 115-145 | Leucine-rich repeat, SDS22-like subfamily | LSNLKRLDLSFNNFTGSLISPKFGEFSNLTH |
| HMMPfam: PF00560 IPR001611
|
117-135 | LRR_1 Leucine-rich repeat
|
NLKRLDLSFNNFTGSLISP |
| HMMSmart: SM00369 IPR003591
|
140-164 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
FSNLTHLDLSHSSFTGLIPSEICHL |
| HMMPfam: PF00560 IPR001611
|
142-164 | LRR_1 Leucine-rich repeat
|
NLTHLDLSHSSFTGLIPSEICHL |
| HMMSmart: SM00369 IPR003591
|
192-216 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTQLRELNLESVNISSTIPSNFSSH |
| Gene3D: G3DSA:3.80.10.10 | 345-512 | no description | NNNFDGGLEFLSFNTQLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFSGKIQEFKSKTLSAVTLKQNKLKGRIPNSLLNQKNLQLLLLSHNNISGHISSAICNLKTLILLDLGSNNLEGTIPQCVVERNEYLSHLDLSKN |
| HMMSmart: SM00365 | 358-384 | Leucine-rich repeat, SDS22-like subfamily | NTQLERLDLSSNSLTGPIPSNISGLQN |
| HMMPfam: PF13855 | 360-417 | LRR_8,Leucine rich repeat | QLERLDLSSNSLTGPIPSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNN |
| superfamily: SSF52058 | 376-774 | L domain-like,LRR | PSNISGLQNLECLYLSSNHLNGSIPSWIFSLPSLVELDLSNNTFSGKIQEFKSKTLSAVTLKQNKLKGRIPNSLLNQKNLQLLLLSHNNISGHISSAICNLKTLILLDLGSNNLEGTIPQCVVERNEYLSHLDLSKNRLSGTINTTFSVGNILRVISLHGNKLTGKVPRSMINCKYLTLLDLGNNMLNDTFPNWLGYLFQLKILSLRSNKLHGPIKSSGNTNLFMGLQILDLSSNGFSGNLPERILGNLQTMKEIDESTGFPEYISDPYDIYYNYLTTISTKGQDYDSVRILDSNMIINLSKNRFEGHIPSIIGDLVGLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGND |
| HMMSmart: SM00369 IPR003591
|
382-406 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LQNLECLYLSSNHLNGSIPSWIFSL |
| Seg: seg | 447-464 | seg | NSLLNQKNLQLLLLSHNN |
| HMMSmart: SM00365 | 452-478 | Leucine-rich repeat, SDS22-like subfamily | QKNLQLLLLSHNNISGHISSAICNLKT |
| HMMPfam: PF13855 | 503-562 | LRR_8,Leucine rich repeat | YLSHLDLSKNRLSGTINTTFSVGNILRVISLHGNKLTGKVPRSMINCKYLTLLDLGNNML |
| FPrintScan: PR00019 | 504-517 | LEURICHRPT,Leucine-rich repeat signature | LSHLDLSKNRLSGT |
| HMMSmart: SM00365 | 573-598 | Leucine-rich repeat, SDS22-like subfamily | LFQLKILSLRSNKLHGPIKSSGNTNL |
| HMMPfam: PF00560 IPR001611
|
602-624 | LRR_1 Leucine-rich repeat
|
LQILDLSSNGFSGNLPERILGNL |
| Gene3D: G3DSA:3.80.10.10 | 672-783 | no description | IINLSKNRFEGHIPSIIGDLVGLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLSK |
| HMMSmart: SM00369 IPR003591
|
691-714 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LVGLRTLNLSHNVLEGHIPASFQN |
| HMMPfam: PF13855 | 693-752 | LRR_8,Leucine rich repeat | GLRTLNLSHNVLEGHIPASFQNLSVLESLDLSSNKISGEIPQQLASLTFLEVLNLSHNHL |
| HMMSmart: SM00369 IPR003591
|
715-738 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSVLESLDLSSNKISGEIPQQLAS |
| HMMSmart: SM00365 | 715-741 | Leucine-rich repeat, SDS22-like subfamily | LSVLESLDLSSNKISGEIPQQLASLTF |
| HMMSmart: SM00369 IPR003591
|
739-764 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTFLEVLNLSHNHLVGCIPKGKQFDS |
| FPrintScan: PR00019 | 739-752 | LEURICHRPT,Leucine-rich repeat signature | LTFLEVLNLSHNHL |
| Seg: seg | 800-804 | seg | EEEEE |
| Seg: seg | 850-861 | seg | HIITTKMKKHKK |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Leaf Mould | Passalora fulva | PRGAV00000035 |
List of References
M Parniske, K E Hammond-Kosack, C Golstein, C M Thomas, D A Jones, K Harrison, B B Wulff, J D Jones
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.
Cell: 1997, 91(6);821-32
PubMed:9413991
WorldCat.org
(P p)
List of Contributions
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