PRGDB00000041 (I-2)

From PRG Wiki
Jump to: navigation, search
I-2
Gene Type Reference_R-Genes,_manually_curated
GenBank 4689222 (AF118127)
Gene Class NL
Domain Type LRR, NBS, LRR, LRR, Others
Chromosome 11
Gene Species Solanum lycopersicum

Comment?

Lycopersicon esculentum disease resistance protein I2 (I2) gene, complete cds.

DNA Sequence

ATGGAGATTGGCTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTAACGGTGATCTGCTCAACATGTTTCGGAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTATTCAGATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGAGACTGGCTTAATGAGCTTCGAGATGCTGTCGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGTCAGCATCAGAATTTTTCAGAAACAAGCAACCAGCAAGTAAGTGATGATTTTTTCCTTAACATAAAGGACAAGCTGGAAGACACTATTGAAACATTAAAGGATTTGCAAGAGCAAATTGGTCTCCTTGGCTTAAAGGAGTATTTTGATTCCACGAAACTAGAAACTAGAAGACCTTCAACTTCTGTGGATGATGAATCTGATATCTTTGGTAGGCAGAGCGAAATAGAGGATTTGATTGACCGTCTATTGTCTGAAGGTGCAAGTGGGAAAAAGCTGACAGTAGTTCCTATCGTTGGAATGGGCGGCCAGGGCAAGACAACACTTGCTAAAGCCGTATACAATGATGAGAGGGTGAAGAATCATTTTGATTTGAAAGCGTGGTATTGCGTTTCTGAAGGATTTGATGCTTTGAGAATAACAAAAGAATTACTCCAAGAAATTGGCAAATTTGACTCGAAGGATGTCCACAACAATCTTAACCAGCTTCAAGTCAAATTGAAGGAAAGTTTGAAGGGAAAGAAGTTCCTTATTGTTTTGGATGATGTGTGGAATGAAAATTACAACGAGTGGAATGACTTGAGAAATATTTTTGCACAAGGAGATATAGGAAGTAAGATCATTGTGACGACACGCAAAGACAGTGTTGCCTTGATGATGGGAAATGAGCAAATTCGCATGGGCAATTTGTCTACCGAAGCCTCTTGGTCTTTATTTCAAAGACATGCATTTGAAAACATGGATCCTATGGGACATCCGGAACTTGAAGAGGTCGGAAGACAAATTGCAGCCAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAACGTATTTTGAGAAGTGAAATATGGGAGCTGCCACACAATGACATATTACCAGCGTTGATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTATGGATTGCCAATGGTCTCGTACCAGTGAAAGATGAAATAAATCAAGATTTAGGCAACCAATACTTTCTAGAGTTGAGATCAAGATCATTATTTGAAAAGGTCCCAAATCCTTCTAAAAGGAACATAGAGGAATTATTCCTTATGCATGACCTTGTCAATGATTTAGCCCAACTTGCATCTTCAAAACTTTGTATCAGGTTAGAAGAGAGCCAAGGATCTCATATGTTGGAACAATGTCGGCACTTATCTTATTCAATAGGATTTAATGGTGAGTTTAAGAAATTGACACCCCTCTACAAATTGGAGCAGTTGAGGACATTGCTTCCGATACGTATTGAATTCAGATTGCACAATCTAAGCAAGAGGGTGTTGCATAACATACTGCCTACACTAAGATCCTTGAGGGCCCTATCATTCTCTCAATACAAGATTAAGGAGTTGCCAAATGACTTGTTTACCAAATTAAAGCTCCTCAGATTTTTGGATATTTCTCGGACATGGATTACAAAGTTGCCGGATTCCATTTGTGGATTATATAACTTGGAGACACTTCTCCTGTCATCTTGTGCTGATCTTGAGGAGCTACCGCTGCAGATGGAGAAGTTGATTAACTTGCGTCATCTTGACGTAAGCAACACTCGGCGCTTGAAGATGCCACTACATCTGAGCAGGTTGAAAAGCCTCCAAGTGTTGGTGGGACCCAAGTTTTTTGTAGATGGTTGGAGAATGGAAGATTTGGGTGAAGCACAAAACTTACATGGATCTCTATCAGTTGTGAAGTTGGAAAATGTGGTTGATAGAAGGGAAGCTGTGAAGGCAAAGATGAGGGAGAAGAATCATGTTGAGCAATTATCATTGGAGTGGAGTGAAAGTAGTATTGCCGACAATTCACAAACAGAAAGTGACATACTTGATGAGCTATGCCCACATAAAAACATCAAAAAAGTCGAAATCAGTGGATATAGAGGGACAAACTTTCCCAATTGGGTAGCTGATCCTTTGTTTCTTAAGCTGGTGAATTTGTCTCTAAGAAACTGCAAGGACTGTTACTCCTTGCCAGCACTAGGACAACTCCCTTGTTTGAAATTCCTTTCCGTTAAAGGGATGCATGGAATAAGAGTGGTGACGGAAGAATTCTATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTCTCTAGAGAAGCTTGAATTTGAAGATATGACGGAGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCAATTAAAAATTGCCCTGAGCTCAGTTTGGAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTAGAAGTTAGTGATTGTCCAGTTGTTTTTGATGATGCCCAACTGTTTAGATCCCAACTTGAGGCAATGAAGCAGATTGAGGAAATAGATATATGTGATTGTAACTCTGTTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGAGAATACAGATATCTCGTTGCCCAAAATTGAAATTGGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGAGTGAATGATTGTGGTTGTGTAGATGATATATCACCTGAGTTTCTCCCAACAGCACGTCAATTGAGTATTGAAAATTGCCAGAACGTTACTAGGTTTTTGATTCCTACTGCCACTGAAACTCTCCGTATTTCGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTCACTGAATATTTGGGGATGTAAGAAGCTCAAGTGTCTTCCAGAACTCCTTCCATCTCTCAAGGAACTGCGTCTGTCTGATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTAGAAATACTCCGTATCATATATTGCAAGAAACTGGTGAATGGCCGAAAGGAGTGGCATTTACAGAGACTCACAGAGTTATGGATCGATCATGATGGGAGTGACGAAGATATTGAACATTGGGAGTTGCCTTGTTCTATTCAGAGACTTACCATAAAGAATCTTAAAACATTAAGCAGCCAACATCTCAAAAGCCTCACCTCTCTTCAATATCTATGTATTGAGGGTTATTTATCTCAGATTCAGTCACAAGGCCAGCTTTCCTCCTTTTCTCACCTCACTTCGCTTCAAACTCTACAAATCTGGAATTTCCTTAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGGAGATAGATGATTGCCCTAATCTCCAATCACTCTTCGAATCAGCACTGCCCTCCTCCCTCTCTCAGCTGTTCATCCAGGATTGCCCTAATCTCCAATCCCTTCCATTTAAAGGGATGCCCTCTTCCCTCTCTAAACTATCTATTTTCAATTGCCCATTGCTCACACCACTACTAGAATTTGACAAGGGGGAATACTGGCCACAAATTGCTCATATTCCCATCATAAATATCGATTGGAAATATATTTAA


Protein sequences

Name Description Sequence
disease resistance protein I2 disease resistance protein I2 [Lycopersicon esculentum].

MEIGLAVGGAFLSSALNVLFDRLAPNGDLLNMFRKHKDHVKLLKKLKMTLRGIQIVLSDAENKQASNPSVRDWLNELRDAVDSAENLIEEVNYEALRLKVEGQHQNFSETSNQQVSDDFFLNIKDKLEDTIETLKDLQEQIGLLGLKEYFDSTKLETRRPSTSVDDESDIFGRQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVTTRKDSVALMMGNEQIRMGNLSTEASWSLFQRHAFENMDPMGHPELEEVGRQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPVKDEINQDLGNQYFLELRSRSLFEKVPNPSKRNIEELFLMHDLVNDLAQLASSKLCIRLEESQGSHMLEQCRHLSYSIGFNGEFKKLTPLYKLEQLRTLLPIRIEFRLHNLSKRVLHNILPTLRSLRALSFSQYKIKELPNDLFTKLKLLRFLDISRTWITKLPDSICGLYNLETLLLSSCADLEELPLQMEKLINLRHLDVSNTRRLKMPLHLSRLKSLQVLVGPKFFVDGWRMEDLGEAQNLHGSLSVVKLENVVDRREAVKAKMREKNHVEQLSLEWSESSIADNSQTESDILDELCPHKNIKKVEISGYRGTNFPNWVADPLFLKLVNLSLRNCKDCYSLPALGQLPCLKFLSVKGMHGIRVVTEEFYGRLSSKKPFNSLEKLEFEDMTEWKQWHALGIGEFPTLENLSIKNCPELSLEIPIQFSSLKRLEVSDCPVVFDDAQLFRSQLEAMKQIEEIDICDCNSVTSFPFSILPTTLKRIQISRCPKLKLEAPVGEMFVEYLRVNDCGCVDDISPEFLPTARQLSIENCQNVTRFLIPTATETLRISNCENVEKLSVACGGAAQMTSLNIWGCKKLKCLPELLPSLKELRLSDCPEIEGELPFNLEILRIIYCKKLVNGRKEWHLQRLTELWIDHDGSDEDIEHWELPCSIQRLTIKNLKTLSSQHLKSLTSLQYLCIEGYLSQIQSQGQLSSFSHLTSLQTLQIWNFLNLQSLAESALPSSLSHLEIDDCPNLQSLFESALPSSLSQLFIQDCPNLQSLPFKGMPSSLSKLSIFNCPLLTPLLEFDKGEYWPQIAHIPIINIDWKYI

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF236
11-1244 PTHR23155:SF236,DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS)

FLSSALNVLFDRLAPNGDLLNMFRKHKDHVKLLKKLKMTLRGIQIVLSDAENKQASNPSVRDWLNELRDAVDSAENLIEEVNYEALRLKVEGQHQNFSETSNQQVSDDFFLNIKDKLEDTIETLKDLQEQIGLLGLKEYFDSTKLETRRPSTSVDDESDIFGRQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVTTRKDSVALMMGNEQIRMGNLSTEASWSLFQRHAFENMDPMGHPELEEVGRQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPVKDEINQDLGNQYFLELRSRSLFEKVPNPSKRNIEELFLMHDLVNDLAQLASSKLCIRLEESQGSHMLEQCRHLSYSIGFNGEFKKLTPLYKLEQLRTLLPIRIEFRLHNLSKRVLHNILPTLRSLRALSFSQYKIKELPNDLFTKLKLLRFLDISRTWITKLPDSICGLYNLETLLLSSCADLEELPLQMEKLINLRHLDVSNTRRLKMPLHLSRLKSLQVLVGPKFFVDGWRMEDLGEAQNLHGSLSVVKLENVVDRREAVKAKMREKNHVEQLSLEWSESSIADNSQTESDILDELCPHKNIKKVEISGYRGTNFPNWVADPLFLKLVNLSLRNCKDCYSLPALGQLPCLKFLSVKGMHGIRVVTEEFYGRLSSKKPFNSLEKLEFEDMTEWKQWHALGIGEFPTLENLSIKNCPELSLEIPIQFSSLKRLEVSDCPVVFDDAQLFRSQLEAMKQIEEIDICDCNSVTSFPFSILPTTLKRIQISRCPKLKLEAPVGEMFVEYLRVNDCGCVDDISPEFLPTARQLSIENCQNVTRFLIPTATETLRISNCENVEKLSVACGGAAQMTSLNIWGCKKLKCLPELLPSLKELRLSDCPEIEGELPFNLEILRIIYCKKLVNGRKEWHLQRLTELWIDHDGSDEDIEHWELPCSIQRLTIKNLKTLSSQHLKSLTSLQYLCIEGYLSQIQSQGQLSSFSHLTSLQTLQIWNFLNLQSLAESALPSSLSHLEIDDCPNLQSLFESALPSSLSQLFIQDCPNLQSLPFKGMPSSLSKLSIFNCPLLTPLLEF

HMMPanther: PTHR23155
11-1244 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

FLSSALNVLFDRLAPNGDLLNMFRKHKDHVKLLKKLKMTLRGIQIVLSDAENKQASNPSVRDWLNELRDAVDSAENLIEEVNYEALRLKVEGQHQNFSETSNQQVSDDFFLNIKDKLEDTIETLKDLQEQIGLLGLKEYFDSTKLETRRPSTSVDDESDIFGRQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVTTRKDSVALMMGNEQIRMGNLSTEASWSLFQRHAFENMDPMGHPELEEVGRQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPVKDEINQDLGNQYFLELRSRSLFEKVPNPSKRNIEELFLMHDLVNDLAQLASSKLCIRLEESQGSHMLEQCRHLSYSIGFNGEFKKLTPLYKLEQLRTLLPIRIEFRLHNLSKRVLHNILPTLRSLRALSFSQYKIKELPNDLFTKLKLLRFLDISRTWITKLPDSICGLYNLETLLLSSCADLEELPLQMEKLINLRHLDVSNTRRLKMPLHLSRLKSLQVLVGPKFFVDGWRMEDLGEAQNLHGSLSVVKLENVVDRREAVKAKMREKNHVEQLSLEWSESSIADNSQTESDILDELCPHKNIKKVEISGYRGTNFPNWVADPLFLKLVNLSLRNCKDCYSLPALGQLPCLKFLSVKGMHGIRVVTEEFYGRLSSKKPFNSLEKLEFEDMTEWKQWHALGIGEFPTLENLSIKNCPELSLEIPIQFSSLKRLEVSDCPVVFDDAQLFRSQLEAMKQIEEIDICDCNSVTSFPFSILPTTLKRIQISRCPKLKLEAPVGEMFVEYLRVNDCGCVDDISPEFLPTARQLSIENCQNVTRFLIPTATETLRISNCENVEKLSVACGGAAQMTSLNIWGCKKLKCLPELLPSLKELRLSDCPEIEGELPFNLEILRIIYCKKLVNGRKEWHLQRLTELWIDHDGSDEDIEHWELPCSIQRLTIKNLKTLSSQHLKSLTSLQYLCIEGYLSQIQSQGQLSSFSHLTSLQTLQIWNFLNLQSLAESALPSSLSHLEIDDCPNLQSLFESALPSSLSQLFIQDCPNLQSLPFKGMPSSLSKLSIFNCPLLTPLLEF

superfamily: SSF52540
153-404 SSF52540

TKLETRRPSTSVDDESDIFGRQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVTTRKDSVALMMGNEQIRMGNLSTEASWSLFQRHAFENMDPMGHPELEEVGRQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHN

Gene3D: G3DSA:3.40.50.300
167-311 G3DSA:3.40.50.300

ESDIFGRQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVT

HMMPfam: PF00931
IPR002182
173-456 NB-ARC,NBS
NB-ARC

RQSEIEDLIDRLLSEGASGKKLTVVPIVGMGGQGKTTLAKAVYNDERVKNHFDLKAWYCVSEGFDALRITKELLQEIGKFDSKDVHNNLNQLQVKLKESLKGKKFLIVLDDVWNENYNEWNDLRNIFAQGDIGSKIIVTTRKDSVALMMGNEQIRMGNLSTEASWSLFQRHAFENMDPMGHPELEEVGRQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPVKD

FPrintScan: PR00364
IPR000767
196-211 DISEASERSIST
Disease resistance protein

VVPIVGMGGQGKTTLA

FPrintScan: PR00364
IPR000767
271-285 DISEASERSIST
Disease resistance protein

SLKGKKFLIVLDDVW

FPrintScan: PR00364
IPR000767
367-381 DISEASERSIST
Disease resistance protein

CKGLPLALKTLAGML

Gene3D: G3DSA:3.80.10.10
455-676 G3DSA:3.80.10.10

KDEINQDLGNQYFLELRSRSLFEKVPNPSKRNIEELFLMHDLVNDLAQLASSKLCIRLEESQGSHMLEQCRHLSYSIGFNGEFKKLTPLYKLEQLRTLLPIRIEFRLHNLSKRVLHNILPTLRSLRALSFSQYKIKELPNDLFTKLKLLRFLDISRTWITKLPDSICGLYNLETLLLSSCADLEELPLQMEKLINLRHLDVSNTRRLKMPLHLSRLKSLQVL

superfamily: SSF52058
492-988 SSF52058,LRR

LMHDLVNDLAQLASSKLCIRLEESQGSHMLEQCRHLSYSIGFNGEFKKLTPLYKLEQLRTLLPIRIEFRLHNLSKRVLHNILPTLRSLRALSFSQYKIKELPNDLFTKLKLLRFLDISRTWITKLPDSICGLYNLETLLLSSCADLEELPLQMEKLINLRHLDVSNTRRLKMPLHLSRLKSLQVLVGPKFFVDGWRMEDLGEAQNLHGSLSVVKLENVVDRREAVKAKMREKNHVEQLSLEWSESSIADNSQTESDILDELCPHKNIKKVEISGYRGTNFPNWVADPLFLKLVNLSLRNCKDCYSLPALGQLPCLKFLSVKGMHGIRVVTEEFYGRLSSKKPFNSLEKLEFEDMTEWKQWHALGIGEFPTLENLSIKNCPELSLEIPIQFSSLKRLEVSDCPVVFDDAQLFRSQLEAMKQIEEIDICDCNSVTSFPFSILPTTLKRIQISRCPKLKLEAPVGEMFVEYLRVNDCGCVDDISPEFLPTARQLSIENCQ

FPrintScan: PR00364
IPR000767
645-661 DISEASERSIST
Disease resistance protein

EKLINLRHLDVSNTRRL

Gene3D: G3DSA:3.80.10.10
741-938 G3DSA:3.80.10.10

NSQTESDILDELCPHKNIKKVEISGYRGTNFPNWVADPLFLKLVNLSLRNCKDCYSLPALGQLPCLKFLSVKGMHGIRVVTEEFYGRLSSKKPFNSLEKLEFEDMTEWKQWHALGIGEFPTLENLSIKNCPELSLEIPIQFSSLKRLEVSDCPVVFDDAQLFRSQLEAMKQIEEIDICDCNSVTSFPFSILPTTLKRI

Gene3D: G3DSA:3.80.10.10
939-1099 G3DSA:3.80.10.10

QISRCPKLKLEAPVGEMFVEYLRVNDCGCVDDISPEFLPTARQLSIENCQNVTRFLIPTATETLRISNCENVEKLSVACGGAAQMTSLNIWGCKKLKCLPELLPSLKELRLSDCPEIEGELPFNLEILRIIYCKKLVNGRKEWHLQRLTELWIDHDGSDED

superfamily: SSF52058
1000-1255 SSF52058,LRR

ETLRISNCENVEKLSVACGGAAQMTSLNIWGCKKLKCLPELLPSLKELRLSDCPEIEGELPFNLEILRIIYCKKLVNGRKEWHLQRLTELWIDHDGSDEDIEHWELPCSIQRLTIKNLKTLSSQHLKSLTSLQYLCIEGYLSQIQSQGQLSSFSHLTSLQTLQIWNFLNLQSLAESALPSSLSHLEIDDCPNLQSLFESALPSSLSQLFIQDCPNLQSLPFKGMPSSLSKLSIFNCPLLTPLLEFDKGEYWPQIAH

Gene3D: G3DSA:3.80.10.10
1100-1237 G3DSA:3.80.10.10

IEHWELPCSIQRLTIKNLKTLSSQHLKSLTSLQYLCIEGYLSQIQSQGQLSSFSHLTSLQTLQIWNFLNLQSLAESALPSSLSHLEIDDCPNLQSLFESALPSSLSQLFIQDCPNLQSLPFKGMPSSLSKLSIFNCPL


Diseases

Disease Pathogen Avirulence gene
Fusarium Wilt Fusarium oxysporum

List of References



List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox