PRGDB00000491 (RPM1)
RPM1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 30680118 (NM_111584) |
Gene Class | CNL |
Domain Type | LRR, NBS, LRR, LRR, Others |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTTCGGCTACTGTTGATTTTGGGATCGGACGGATTCTTAGTGTCCTGGAAAACGAGACCTTGTTATTGTCAGGAGTCCATGGTGAGATTGATAAAATGAAGAAGGAGTTGCTGATCATGAAGTCCTTTCTTGAGGATACTCATAAACATGGTGGAAATGGATCCACAACAACAACAACTCAACTCTTCCAAACTTTTGTGGCAAACACGAGAGATTTGGCTTACCAAATCGAAGACATTCTCGACGAGTTTGGCTATCACATCCACGGTTATCGTAGCTGCGCCAAAATTTGGCGTGCGTTTCATTTCCCGAGGTATATGTGGGCGAGGCACTCGATAGCTCAAAAGCTAGGAATGGTTAATGTCATGATTCAATCCATTTCTGATTCCATGAAAAGGTACTATCATTCAGAAAACTACCAAGCAGCATTATTACCGCCTATTGATGATGGCGATGCAAAGTGGGTGAACAACATCAGTGAGTCATCTCTTTTCTTTAGTGAAAATAGTCTTGTAGGGATTGATGCACCCAAGGGAAAGCTCATCGGACGGCTTCTAAGTCCCGAACCTCAGCGGATTGTTGTCGCGGTGGTTGGGATGGGCGGTTCAGGGAAAACTACACTCTCAGCGAATATCTTCAAGTCTCAAAGTGTGCGGAGGCATTTTGAGTCTTACGCTTGGGTTACAATCTCGAAATCTTATGTGATTGAAGATGTGTTTAGGACCATGATCAAGGAGTTTTACAAAGAAGCAGATACACAGATTCCAGCTGAATTATACTCCTTAGGCTACAGAGAGTTGGTGGAAAAACTTGTGGAGTATTTGCAGTCGAAGAGGTACATTGTTGTGCTTGATGATGTATGGACCACTGGTCTATGGAGGGAGATAAGTATTGCTTTACCAGATGGTATTTATGGAAGTCGTGTTATGATGACTACTCGGGACATGAACGTGGCTTCTTTCCCATATGGAATTGGGAGCACAAAGCACGAGATTGAGCTCTTAAAAGAAGACGAAGCTTGGGTGCTTTTCTCCAACAAAGCTTTTCCGGCAAGTCTTGAGCAATGCAGAACGCAGAATTTGGAGCCGATAGCACGAAAATTAGTCGAGAGATGTCAGGGTTTGCCATTAGCTATTGCTTCTTTGGGAAGCATGATGTCAACCAAGAAGTTTGAATCAGAATGGAAGAAAGTCTACAGTACTTTAAACTGGGAACTGAACAACAATCATGAACTCAAGATTGTTCGAAGCATTATGTTCCTTAGCTTCAATGATTTGCCATACCCGCTTAAACGTTGTTTCTTATATTGTTCTCTTTTCCCTGTGAACTATCGGATGAAAAGAAAGAGGCTCATTAGGATGTGGATGGCACAAAGGTTTGTGGAACCGATCAGAGGAGTGAAAGCAGAAGAAGTGGCTGATAGTTACCTCAATGAACTTGTTTACAGAAATATGCTTCAAGTTATCTTGTGGAATCCTTTTGGACGACCCAAGGCGTTCAAGATGCATGACGTGATATGGGAGATTGCTCTATCTGTATCCAAACTTGAGAGGTTCTGTGATGTATATAATGATGACAGTGATGGTGATGATGCTGCAGAAACAATGGAGAATTACGGTAGTCGCCATTTATGCATTCAGAAAGAGATGACACCTGATAGTATACGTGCAACAAACCTTCACTCTCTTTTGGTTTGCTCTTCTGCTAAACACAAGATGGAATTACTTCCAAGTCTGAACCTTCTGAGAGCCTTAGACCTTGAAGACTCTTCCATCAGCAAGTTACCAGATTGTTTAGTAACTATGTTCAACTTAAAGTACTTGAATTTGTCCAAGACACAGGTGAAAGAACTGCCAAAAAACTTCCATAAACTCGTCAATTTGGAGACGTTGAACACAAAGCACTCCAAGATTGAGGAACTTCCTCTAGGGATGTGGAAATTGAAGAAGTTGCGATATCTCATTACTTTTCGCCGCAATGAAGGACATGATTCCAATTGGAATTATGTTTTAGGTACAAGGGTTGTTCCTAAAATCTGGCAGTTGAAGGATTTGCAAGTCATGGACTGCTTCAACGCAGAAGATGAGCTTATCAAAAATCTCGGGTGTATGACTCAGCTCACAAGAATAAGTCTTGTCATGGTTAGGAGAGAACATGGAAGAGACTTGTGCGATTCACTGAATAAGATTAAAAGAATTCGATTCTTATCTTTAACGTCGATTGATGAAGAGGAACCGTTAGAGATAGATGACCTGATCGCAACTGCAAGCATTGAGAAGCTCTTTCTTGCTGGGAAACTGGAGAGAGTACCAAGTTGGTTCAACACTCTTCAAAACCTTACCTATTTGGGTTTGCGTGGATCTCAGCTACAGGAAAACGCCATTCTCTCTATCCAAACGCTTCCTAGATTGGTATGGCTTTCATTTTACAATGCATACATGGGACCTAGGTTGCGTTTTGCACAAGGATTTCAGAATCTGAAGATTCTAGAGATAGTTCAGATGAAACATCTGACAGAAGTTGTTATAGAAGACGGTGCAATGTTTGAGCTTCAGAAGCTTTATGTCAGGGCTTGTAGAGGGTTAGAGTACGTACCAAGAGGAATTGAGAATCTTATAAATCTTCAAGAACTGCATTTGATTCATGTTTCTAATCAGTTAGTAGAACGCATTCGCGGAGAAGGGAGTGTGGACCGGTCAAGGGTTAAACACATTCCTGCGATTAAGCATTATTTCAGAACTGATAATGGCTCTTTCTATGTGAGCCTCTCATCTTAG
Protein sequences
Name | Description | Sequence |
---|---|---|
RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); protein binding | RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); protein binding [Arabidopsis thaliana]. | MASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155:SF234 | 2-926 | PTHR23155:SF234,RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) | ASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
HMMPanther: PTHR23155 | 2-926 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
superfamily: SSF52540 | 155-411 | SSF52540 | KWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNH |
HMMPfam: PF00931 IPR002182
|
177-465 | NB-ARC,NBS NB-ARC
|
APKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPI |
Gene3D: G3DSA:3.40.50.300 | 190-218 | G3DSA:3.40.50.300 | EPQRIVVAVVGMGGSGKTTLSANIFKSQS |
FPrintScan: PR00364 IPR000767
|
195-210 | DISEASERSIST Disease resistance protein
|
VVAVVGMGGSGKTTLS |
FPrintScan: PR00364 IPR000767
|
275-289 | DISEASERSIST Disease resistance protein
|
YLQSKRYIVVLDDVW |
FPrintScan: PR00364 IPR000767
|
373-387 | DISEASERSIST Disease resistance protein
|
CQGLPLAIASLGSMM |
superfamily: SSF52058 | 502-883 | SSF52058,LRR | KMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIH |
Gene3D: G3DSA:3.80.10.10 | 577-655 | G3DSA:3.80.10.10 | LPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYL |
FPrintScan: PR00364 IPR000767
|
578-594 | DISEASERSIST Disease resistance protein
|
PSLNLLRALDLEDSSIS |
HMMPfam: PF00560 IPR001611
|
605-626 | LRR_1 Leucine-rich repeat
|
NLKYLNLSKTQVKELPKNFHKL |
Gene3D: G3DSA:3.80.10.10 | 679-884 | G3DSA:3.80.10.10 | KIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHV |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Bacterial Blight | Pseudomonas syringae | PRGAV00000043 |
Bacterial Blight | Pseudomonas syringae | PRGAV00000043 |
List of Contributions
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