PRGDB00000491 (RPM1)
| RPM1 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 30680118 (NM_111584) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, LRR, LRR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTTCGGCTACTGTTGATTTTGGGATCGGACGGATTCTTAGTGTCCTGGAAAACGAGACCTTGTTATTGTCAGGAGTCCATGGTGAGATTGATAAAATGAAGAAGGAGTTGCTGATCATGAAGTCCTTTCTTGAGGATACTCATAAACATGGTGGAAATGGATCCACAACAACAACAACTCAACTCTTCCAAACTTTTGTGGCAAACACGAGAGATTTGGCTTACCAAATCGAAGACATTCTCGACGAGTTTGGCTATCACATCCACGGTTATCGTAGCTGCGCCAAAATTTGGCGTGCGTTTCATTTCCCGAGGTATATGTGGGCGAGGCACTCGATAGCTCAAAAGCTAGGAATGGTTAATGTCATGATTCAATCCATTTCTGATTCCATGAAAAGGTACTATCATTCAGAAAACTACCAAGCAGCATTATTACCGCCTATTGATGATGGCGATGCAAAGTGGGTGAACAACATCAGTGAGTCATCTCTTTTCTTTAGTGAAAATAGTCTTGTAGGGATTGATGCACCCAAGGGAAAGCTCATCGGACGGCTTCTAAGTCCCGAACCTCAGCGGATTGTTGTCGCGGTGGTTGGGATGGGCGGTTCAGGGAAAACTACACTCTCAGCGAATATCTTCAAGTCTCAAAGTGTGCGGAGGCATTTTGAGTCTTACGCTTGGGTTACAATCTCGAAATCTTATGTGATTGAAGATGTGTTTAGGACCATGATCAAGGAGTTTTACAAAGAAGCAGATACACAGATTCCAGCTGAATTATACTCCTTAGGCTACAGAGAGTTGGTGGAAAAACTTGTGGAGTATTTGCAGTCGAAGAGGTACATTGTTGTGCTTGATGATGTATGGACCACTGGTCTATGGAGGGAGATAAGTATTGCTTTACCAGATGGTATTTATGGAAGTCGTGTTATGATGACTACTCGGGACATGAACGTGGCTTCTTTCCCATATGGAATTGGGAGCACAAAGCACGAGATTGAGCTCTTAAAAGAAGACGAAGCTTGGGTGCTTTTCTCCAACAAAGCTTTTCCGGCAAGTCTTGAGCAATGCAGAACGCAGAATTTGGAGCCGATAGCACGAAAATTAGTCGAGAGATGTCAGGGTTTGCCATTAGCTATTGCTTCTTTGGGAAGCATGATGTCAACCAAGAAGTTTGAATCAGAATGGAAGAAAGTCTACAGTACTTTAAACTGGGAACTGAACAACAATCATGAACTCAAGATTGTTCGAAGCATTATGTTCCTTAGCTTCAATGATTTGCCATACCCGCTTAAACGTTGTTTCTTATATTGTTCTCTTTTCCCTGTGAACTATCGGATGAAAAGAAAGAGGCTCATTAGGATGTGGATGGCACAAAGGTTTGTGGAACCGATCAGAGGAGTGAAAGCAGAAGAAGTGGCTGATAGTTACCTCAATGAACTTGTTTACAGAAATATGCTTCAAGTTATCTTGTGGAATCCTTTTGGACGACCCAAGGCGTTCAAGATGCATGACGTGATATGGGAGATTGCTCTATCTGTATCCAAACTTGAGAGGTTCTGTGATGTATATAATGATGACAGTGATGGTGATGATGCTGCAGAAACAATGGAGAATTACGGTAGTCGCCATTTATGCATTCAGAAAGAGATGACACCTGATAGTATACGTGCAACAAACCTTCACTCTCTTTTGGTTTGCTCTTCTGCTAAACACAAGATGGAATTACTTCCAAGTCTGAACCTTCTGAGAGCCTTAGACCTTGAAGACTCTTCCATCAGCAAGTTACCAGATTGTTTAGTAACTATGTTCAACTTAAAGTACTTGAATTTGTCCAAGACACAGGTGAAAGAACTGCCAAAAAACTTCCATAAACTCGTCAATTTGGAGACGTTGAACACAAAGCACTCCAAGATTGAGGAACTTCCTCTAGGGATGTGGAAATTGAAGAAGTTGCGATATCTCATTACTTTTCGCCGCAATGAAGGACATGATTCCAATTGGAATTATGTTTTAGGTACAAGGGTTGTTCCTAAAATCTGGCAGTTGAAGGATTTGCAAGTCATGGACTGCTTCAACGCAGAAGATGAGCTTATCAAAAATCTCGGGTGTATGACTCAGCTCACAAGAATAAGTCTTGTCATGGTTAGGAGAGAACATGGAAGAGACTTGTGCGATTCACTGAATAAGATTAAAAGAATTCGATTCTTATCTTTAACGTCGATTGATGAAGAGGAACCGTTAGAGATAGATGACCTGATCGCAACTGCAAGCATTGAGAAGCTCTTTCTTGCTGGGAAACTGGAGAGAGTACCAAGTTGGTTCAACACTCTTCAAAACCTTACCTATTTGGGTTTGCGTGGATCTCAGCTACAGGAAAACGCCATTCTCTCTATCCAAACGCTTCCTAGATTGGTATGGCTTTCATTTTACAATGCATACATGGGACCTAGGTTGCGTTTTGCACAAGGATTTCAGAATCTGAAGATTCTAGAGATAGTTCAGATGAAACATCTGACAGAAGTTGTTATAGAAGACGGTGCAATGTTTGAGCTTCAGAAGCTTTATGTCAGGGCTTGTAGAGGGTTAGAGTACGTACCAAGAGGAATTGAGAATCTTATAAATCTTCAAGAACTGCATTTGATTCATGTTTCTAATCAGTTAGTAGAACGCATTCGCGGAGAAGGGAGTGTGGACCGGTCAAGGGTTAAACACATTCCTGCGATTAAGCATTATTTCAGAACTGATAATGGCTCTTTCTATGTGAGCCTCTCATCTTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); protein binding | RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); protein binding [Arabidopsis thaliana]. | MASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF234 | 2-926 | PTHR23155:SF234,RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) | ASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
| HMMPanther: PTHR23155 | 2-926 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIKHYFRTDNGSFYVSLSS |
| superfamily: SSF52540 | 155-411 | SSF52540 | KWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNH |
| HMMPfam: PF00931 IPR002182
|
177-465 | NB-ARC,NBS NB-ARC
|
APKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPI |
| Gene3D: G3DSA:3.40.50.300 | 190-218 | G3DSA:3.40.50.300 | EPQRIVVAVVGMGGSGKTTLSANIFKSQS |
| FPrintScan: PR00364 IPR000767
|
195-210 | DISEASERSIST Disease resistance protein
|
VVAVVGMGGSGKTTLS |
| FPrintScan: PR00364 IPR000767
|
275-289 | DISEASERSIST Disease resistance protein
|
YLQSKRYIVVLDDVW |
| FPrintScan: PR00364 IPR000767
|
373-387 | DISEASERSIST Disease resistance protein
|
CQGLPLAIASLGSMM |
| superfamily: SSF52058 | 502-883 | SSF52058,LRR | KMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIH |
| Gene3D: G3DSA:3.80.10.10 | 577-655 | G3DSA:3.80.10.10 | LPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYL |
| FPrintScan: PR00364 IPR000767
|
578-594 | DISEASERSIST Disease resistance protein
|
PSLNLLRALDLEDSSIS |
| HMMPfam: PF00560 IPR001611
|
605-626 | LRR_1 Leucine-rich repeat
|
NLKYLNLSKTQVKELPKNFHKL |
| Gene3D: G3DSA:3.80.10.10 | 679-884 | G3DSA:3.80.10.10 | KIWQLKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHV |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Bacterial Blight | Pseudomonas syringae | PRGAV00000043 |
| Bacterial Blight | Pseudomonas syringae | PRGAV00000043 |
List of Contributions
There has not been any contribution yet.
