PRGDB00046263 (At4g14610)

At4g14610
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	104646447 (DQ527887)
Gene Class	T
Domain Type	LRR, LRR, LRR, TIR, Receptor-Like Kinase
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Pro-0 disease resistance protein (At4g14610) gene, partial cds.

DNA Sequence

GAAGAACTGGAGAGCTGTGAGAAGAATGTCGTTGATGAAAAATGAGCTTGAAAAGATTTTGGGTTGCCCTACATGTCCTCAACTTACAACTCTCCTCCTCCAAAAAAACCACAAATTGGTAAATATTTCCGGAGAATTCTTTCGATTCATGCCTAACCTTGTCGTATTGGATTTATCATGGAATAGTAGTCTCACTGGATTACCAAAGAAAATATCAGAGTTAGTCTCCTTGCGATATCTTGACTTGTCGTATACAAACATCGAAAGGTTGCCTGTTGGTTTACAAGAGTTGAAACAACTAATACATCTGAATTTGGAGTCCATGAAGAGTTTGGAGAGTATTGCTGGGGTATCTAAGTTGTTGAGTTTGAAGACACTGAGACTACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATAGATATCTTCTCAAGTTTGGTTTTGGAACATTTGTTATGCTCTCAGAGATTGGCGAAATCTATTCAATATGTAGAGCTTATAGAGGTTGAGGAAGAATCTTTCAAAATATTAACTTTTCCAAGCATGTGTAATATCCGTCGAATTGGCATATGGAAGTGTGGAATGAAGGAGATAAAAGTCGAGATGAGAACATCATCATGCTTCTCTAGCCTCTCCAAAGTCGTTATAGGACAATGTGATGGTCTAAAGGAGTTGACATGGCTATTGTTTGCTCCAAACCTTACTTATCTCGACGTTCGTTTCGCAGAGCAACTTGAGGATATAATCAGTGAAGAAAAAGCTGCAAGTGTTACAGACGAGAATGCAAGTATTATCATTCCTTTTCAAAAACTAGAATGTCTTAGCTTATCTGATTTACCTAAGCTAAAGAGCATCTACTGGTCACCACTCTCTTTTCCACGTCTGAGTGAGCTTGCAGTGCAAGAACATTGTCCAAAGCTGAAAAAGCTTCCATTAAACTCCAAGAGTGGAACTGCAGGTGTAGAACTTGTCGTAAAATACGGCGAAAACAA

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Arabidopsis thaliana].	KNWRAVRRMSLMKNELEKILGCPTCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNIERLPVGLQELKQLIHLNLESMKSLESIAGVSKLLSLKTLRLQXXXXXXXXXXXXXXXXXXXXXXXTIDIFSSLVLEHLLCSQRLAKSIQYVELIEVEEESFKILTFPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDVRFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGEN

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52058	1-328	SSF52058,LRR	KNWRAVRRMSLMKNELEKILGCPTCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNIERLPVGLQELKQLIHLNLESMKSLESIAGVSKLLSLKTLRLQXXXXXXXXXXXXXXXXXXXXXXXTIDIFSSLVLEHLLCSQRLAKSIQYVELIEVEEESFKILTFPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDVRFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEHCPKLKKLPLNS
HMMPanther: PTHR23155	4-343	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	RAVRRMSLMKNELEKILGCPTCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNIERLPVGLQELKQLIHLNLESMKSLESIAGVSKLLSLKTLRLQXXXXXXXXXXXXXXXXXXXXXXXTIDIFSSLVLEHLLCSQRLAKSIQYVELIEVEEESFKILTFPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDVRFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGE
HMMPanther: PTHR23155:SF108	4-343	PTHR23155:SF108,SUBFAMILY NOT NAMED	RAVRRMSLMKNELEKILGCPTCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNIERLPVGLQELKQLIHLNLESMKSLESIAGVSKLLSLKTLRLQXXXXXXXXXXXXXXXXXXXXXXXTIDIFSSLVLEHLLCSQRLAKSIQYVELIEVEEESFKILTFPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDVRFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGE
Gene3D: G3DSA:3.80.10.10	9-129	G3DSA:3.80.10.10	MSLMKNELEKILGCPTCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNIERLPVGLQELKQLIHLNLESMKSLESIAGVSKLLSLKTLRLQ
HMMPfam: PF13855	26-87	LRR_8,Leucine rich repeat	PQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNSSLTGLPKKISELVSLRYLDLSYTNI
ProfileScan: PS51450 IPR001611	27-49	LRR,Leucine-rich repeat profile. Leucine-rich repeat	QLTTLLLQKNHKLVNISGEFFRF
ProfileScan: PS51450 IPR001611	52-74	LRR,Leucine-rich repeat profile. Leucine-rich repeat	NLVVLDLSWNSSLTGLPKKISEL
ProfileScan: PS51450 IPR001611	76-98	LRR,Leucine-rich repeat profile. Leucine-rich repeat	SLRYLDLSYTNIERLPVGLQELK
ProfileScan: PS51450 IPR001611	99-121	LRR,Leucine-rich repeat profile. Leucine-rich repeat	QLIHLNLESMKSLESIAGVSKLL
Gene3D: G3DSA:3.80.10.10	193-328	G3DSA:3.80.10.10	FPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDVRFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEHCPKLKKLPLNS

List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show