PRGDB00046990 (disease resistance protein (TIR-NBS-LRR class), putative)

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disease resistance protein (TIR-NBS-LRR class), putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 18422108 (NM_123519)
Gene Class TNL
Domain Type LRR, LRR, NBS, LRR, TIR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS-LRR class), putative (AT5G41550) mRNA, complete cds.

DNA Sequence

ATGGCTTTGTCTTCTTCTTCGTCTAACATCAGGAGATACCATGTCTTTCCAAGCTTCCATGGCCCAGATGTTCGTAAAGGTTTTCTCAGTCATTTACACTATCATTTTGCAAGCAAAGGAATCACGACCTTCAAGGATCAGGAGATTGAGAAAGGCAATACGATTGGACCTGAGCTCGTAAATGCAATTAGAGAGTCTAGAGTCTCGATTGTGTTGCTTTCGAAAAAGTATGCTTCTTCGAGCTGGTGTTTAGATGAATTGGTTGAAATCTTAAAGTGCAAAGAAGATCAGGGCCAGATTGTGATGACCATCTTCTACGATGTTGATCCGTCGAGTGTACGGAAACAGAAGGGAGATTTCGGAAGCACATTCATGAAAACTTGTGAAGGGAAAAGTGAGGAGGTGAAGCAGAGATGGACCAAAGCTTTGACTCATGTTGCAAACATAAAAGGAGAACATTCTCTTAATTGGGCTAATGAAGCAGATATGATCCAAAAGATTGCTACAGATGTTTCAACCAAACTCAGTGTTACACCTTCAAGGGATTTTGAAGGGATGGTCGGACTTGAAGCTCATTTGACAAAATTGAATTCTTTGCTATGCTTCGAGGGCGATGATGTGAAGATGATTGGAATTTGGGGTCCTGCGGGAATTGGTAAGTCTACCATTGCTAGAGCTTTATACAACCAACTCTCTAGCAGTTTTCAACTTAAATGTTTTATGGGGAACCTCAAGGGAAGTCTTAAGAGCATAGTGGGTGTTGATCACTATGAATTCCAGAAGTCTCTGCAAAAGCTACTTCTGGCTAAGATTTTGAACCAAGGAGATATGAGGGTACATAATTTAGCTGCAATAAAAGAATGGCTGCAAGATCAAAGAGTGCTTATCATTCTTGATGATGTAGATGATCTAGAGCAATTAGAGGTATTGGCTAAAGAACTTTCATGGTTTGGTTCTGGAAGCCGGATCATCGTTGCCACAGAAGATAAGAAGATTTTGAAGGAACACGGGATCAACGATATCTACCATGTGGATTTTCCGTCCATGGAAGAAGCTCTTGAGATCTTATGTCTCTCTGCTTTCAAACAAAGCTCTGTACCAGATGGTTTTGAAGAGCTTGCCAAGAAAGTAGTACATCTTTGCGGTAATCTTCCGTTAGGCCTTTCTATTGTGGGTTCATCTTTGCGTGGGGAGAGCAAGCACGAGTGGGAACTTCAATTACCTAGGATCGAAGCAAGTCTTGATGGAAAAATTGAAAGCATATTAAAAGTGGGATATGAGAGATTGTCGAAGAAAAATCAATCACTATTCCTTCACATTGCATGCTTCTTCAACTACAGAAGTGTTGATTACGTCACAGTTATGCTTGCTGACAGTAACTTGGATGTTAGAAATGGGTTGAAGACACTAGCCGATAAATGTTTCGTGCATATATCTATTAATGGATGGATAGTGATGCACCATCATCTACTACAACAATTGGGTAGACAGATAGTTCTTGAACAGTCTGACGAGCCCGGGAAACGTCAATTTTTAATTGAGGCTGAAGAGATTCGTGCAGTACTGACAGATGAAACAGGTACTGGATCAGTCATAGGTATATCATATAATACATCCAATATCGGAGAGGTTTCTGTAAGTAAGGGTGCTTTTGAAGGAATGCGTAATCTCCGGTTCCTAAGAATCTTTAATTATTTGTTTAGCGGCAAATGTACTTTGCAAATACCAGAAGATATGGAGTATTTACCTCCTCTTAGGTTACTACATTGGGATCGCTACCCAAGAAAAAGTCTTCCTACAAAATTTCAGCCGGAACGTCTCTTGGAACTCCATATGCCACACAGCAATCTCGAGAAGCTCTGGGGAGGAATCCAGCCCCTTCCTAATATCAAGAGCATAGATCTGAGCTTTTCCATTAGATTGAAAGAAATCCCAAATCTTTCGAATGCTACTAATCTCGAGACATTGAACCTTACTCACTGCAAAACTTTGGTGGAACTTCCCTCCTCTATTTCGAATCTACACAAACTGAAAAAGCTGAAGATGTCAGGGTGCGAAAAGCTACGAGTTATTCCCACCAACATCAACTTAGCATCTCTTGAGGTAGTCAGAATGAATTATTGCTCGCGATTGCGACGTTTTCCAGATATCTCAAGTAACATCAAGACTCTTAGTGTCGGAAATACAAAGATAGAAAATTTCCCTCCATCGGTTGCTGGATCTTGGTCTCGTCTTGCGCGCCTTGAGATTGGCAGCAGAAGCCTCAAGATATTAACACATGCCCCACAAAGTATAATTTCGCTAAATCTTAGCAACAGTGATATAAGGAGGATTCCAGATTGCGTCATAAGTCTCCCGTATCTAGTAGAACTTATCGTCGAAAACTGCAGAAAACTCGTGACAATTCCGGCTCTTCCCCCTTGGCTCGAGTCCCTAAATGCAAACAAATGTGCATCACTCAAGAGAGTATGTTGCTCTTTCGGCAACCCAACCATACTCACATTCTACAACTGTTTGAAACTGGATGAAGAAGCAAGAAGAGGAATTATCATGCAACAACCAGTTGACGAGTATATATGCTTACCAGGTAAAGAAATCCCAGCAGAGTTCAGTCACAAAGCTGTAGGGAATTCCATAACTATCCCTCTGGCTCCCGGTACTTTCCTGGCTTCCTCAAGATACAAGGCTTGCTTTGTGATTTTGCCAGTTACGGGCTACCGATGTCATAGTATAAGTTGCATCGTAAGTAGCAAAGCGGGGTTTGCAATGCGCATCTGCGACTTAGCACGGCTTTCAGATTGGTCTCCTGGGACGGAACATCTGTTTATATTTCACGGTCGCTTGGTTTATCAACGAAACATGATTTTGAGCGAGATTATATTTAAGTTCAACTGTGTTATAAATGAGTTCAGCGATGACCCTGACCTCGATAACATGATTATTGAGTGTGGTGTACAGATCATGACGGAGGAAGCTAAGGGTAGCAGCAGCAGCGACGTGGACAACTTTGAAACTAAGAGTAGCAGCAGCGAATTGGAAAACTTTGAAACTGAGAGTAGCAGCAGCGAATTGGACATCTTTGAAACTGAGAGTAGCAGCAGCGAAGCGGACTACTATGAAGATGAAGGTTTAAAGTTCTCTCAAGTTGAAAGCACCAAAACCAGTAAACATACAAGTTGTTGGAGTTGGTTTACGAAGCATGGTCTGAGAAAGAAGAAGATGAATAAAACAAGAGCGAATTCTCGTGGAATCTCATGA


Protein sequences

Name Description Sequence
disease resistance protein (TIR-NBS-LRR class), putative disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana].

MALSSSSSNIRRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANIKGEHSLNWANEADMIQKIATDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVMLADSNLDVRNGLKTLADKCFVHISINGWIVMHHHLLQQLGRQIVLEQSDEPGKRQFLIEAEEIRAVLTDETGTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCASLKRVCCSFGNPTILTFYNCLKLDEEARRGIIMQQPVDEYICLPGKEIPAEFSHKAVGNSITIPLAPGTFLASSRYKACFVILPVTGYRCHSISCIVSSKAGFAMRICDLARLSDWSPGTEHLFIFHGRLVYQRNMILSEIIFKFNCVINEFSDDPDLDNMIIECGVQIMTEEAKGSSSSDVDNFETKSSSSELENFETESSSSELDIFETESSSSEADYYEDEGLKFSQVESTKTSKHTSCWSWFTKHGLRKKKMNKTRANSRGIS

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-152 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MALSSSSSNIRRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANIKGE

ProfileScan: PS50104
IPR000157
11-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANI

Gene3D: G3DSA:3.40.50.10140
11-147 G3DSA:3.40.50.10140

RRYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVA

HMMSmart: SM00255
IPR000157
12-149 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RYHVFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANI

HMMPfam: PF01582
IPR000157
15-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFPSFHGPDVRKGFLSHLHYHFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTH

HMMPanther: PTHR11017
35-1042 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

HFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANIKGEHSLNWANEADMIQKIATDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVMLADSNLDVRNGLKTLADKCFVHISINGWIVMHHHLLQQLGRQIVLEQSDEPGKRQFLIEAEEIRAVLTDETGTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCASLKRVCCSFGNPTILTFYNCLKLDEEARRGIIMQQPVDEYICLPGKEIPAEFSHKAVGNSITIPLAPGTFLASSRYKACFVILPVTGYRCHSISCIVSSKAGFAMRICDLARLSDWSPGTEHLFIFHGRLVYQRNMILSEIIFKFNCVINEFSDDPDLDNMIIECGVQIMTEEAKGSSSSDVDNFETKSSSSELENFETESSSSELDIFETESSSSEADYYEDE

HMMPanther: PTHR11017:SF20
35-1042 PTHR11017:SF20,SUBFAMILY NOT NAMED

HFASKGITTFKDQEIEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTKALTHVANIKGEHSLNWANEADMIQKIATDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVMLADSNLDVRNGLKTLADKCFVHISINGWIVMHHHLLQQLGRQIVLEQSDEPGKRQFLIEAEEIRAVLTDETGTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCASLKRVCCSFGNPTILTFYNCLKLDEEARRGIIMQQPVDEYICLPGKEIPAEFSHKAVGNSITIPLAPGTFLASSRYKACFVILPVTGYRCHSISCIVSSKAGFAMRICDLARLSDWSPGTEHLFIFHGRLVYQRNMILSEIIFKFNCVINEFSDDPDLDNMIIECGVQIMTEEAKGSSSSDVDNFETKSSSSELENFETESSSSELDIFETESSSSEADYYEDE

superfamily: SSF52540
169-418 SSF52540

TDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKI

Gene3D: G3DSA:3.40.50.300
177-335 G3DSA:3.40.50.300

VTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKE

HMMPfam: PF00931
IPR002182
190-450 NB-ARC,NBS
NB-ARC

EAHLTKLNSLLCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVD

HMMSmart: SM00382
IPR003593
206-347 AAA,NBS
AAA+ ATPase domain

DVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKSLQKLLLAKILNQGDMRVHNLAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKILKEHGINDIYHVDFP

FPrintScan: PR00364
IPR000767
209-224 DISEASERSIST
Disease resistance protein

MIGIWGPAGIGKSTIA

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

WLQDQRVLIILDDVD

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

CGNLPLGLSIVGSSL

superfamily: SSF46785
416-523 SSF46785

GKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYVTVMLADSNLDVRNGLKTLADKCFVHISINGWIVMHHHLLQQLGRQIVLEQSDEPGKRQFLIEAEEIRAVLT

superfamily: SSF52058
497-841 SSF52058,LRR

QIVLEQSDEPGKRQFLIEAEEIRAVLTDETGTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCASLKRVCCSFGNPTILTFYNCLKL

Gene3D: G3DSA:3.80.10.10
545-818 G3DSA:3.80.10.10

SVSKGAFEGMRNLRFLRIFNYLFSGKCTLQIPEDMEYLPPLRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEIPNLSNATNLETLNLTHCKTLVELPSSISNLHKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAGSWSRLARLEIGSRSLKILTHAPQSIISLNLSNSDIRRIPDCVISLPYLVELIVENCRKLVTIPALPPWLESLNANKCA

HMMPfam: PF07725
IPR011713
607-625 LRR_3
Leucine-rich repeat 3

LLELHMPHSNLEKLWGGIQ

HMMPfam: PF00560
IPR001611
652-674 LRR_1
Leucine-rich repeat

NLETLNLTHCKTLVELPSSISNL

FPrintScan: PR00364
IPR000767
672-688 DISEASERSIST
Disease resistance protein

SNLHKLKKLKMSGCEKL






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