PRGDB00047101 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 85541768 (DQ341402)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone SPRGA-8 putative disease resistance protein gene, partial cds.

DNA Sequence

GGGGGTGTTGGGAAGACTACCATTGCTAAAGCCATGTATGAAAAAATTAATGGAATGTTCGATGGTAATTGCTTTCTTGGAGATGTTAGATCAAAATGTTTAGAGAAAGGATGCGCAGGGTTAAAATGCTTACAGGAGCAGCTTCTTTGTAAAATTCTCCTCACAACAAAAGTTGAAGTTGACAATGTTGACGAAGGAATTAGTTTGATCGAAAGAAGACTTCGAGCTAAAAAGGTTCTTATTGTTATTGATGACATAGACAGTGAGATTCAATTAAATGCATTAGCTGGAGAGCGAAATTGGTTTGGTCGAGGAAGTACAATTATCGTTACGACTAGAAATGCTAATTTGTTGAATGGCCCTGGAAAAGATTATGAAAAGTATGAGGTCCGACGGTTAGACTTTGACAAATCGTTGCAACTCTTTAGTTGGCATACTTTTAAGCATCCTAACCCATTGGAGCCTTTTGTTGAAATATCAGACAAGATAGTAAGTTTTGCTGGGGGATTTCCTCTGGCTGC


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Ipomoea batatas].

GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLAA

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-173 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA

superfamily: SSF52540
1-173 SSF52540

GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA

HMMPanther: PTHR11017
1-173 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA

HMMPfam: PF00931
IPR002182
1-173 NB-ARC,NBS
NB-ARC

GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA

Gene3D: G3DSA:3.40.50.300
2-126 G3DSA:3.40.50.300

GVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYE

FPrintScan: PR00364
IPR000767
73-87 DISEASERSIST
Disease resistance protein

RLRAKKVLIVIDDID

FPrintScan: PR00364
IPR000767
167-174 DISEASERSIST
Disease resistance protein

AGGFPLAA


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