PRGDB00047101 (putative disease resistance protein)

putative disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	85541768 (DQ341402)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Ipomoea batatas
	Comment?

Ipomoea batatas clone SPRGA-8 putative disease resistance protein gene, partial cds.

DNA Sequence

GGGGGTGTTGGGAAGACTACCATTGCTAAAGCCATGTATGAAAAAATTAATGGAATGTTCGATGGTAATTGCTTTCTTGGAGATGTTAGATCAAAATGTTTAGAGAAAGGATGCGCAGGGTTAAAATGCTTACAGGAGCAGCTTCTTTGTAAAATTCTCCTCACAACAAAAGTTGAAGTTGACAATGTTGACGAAGGAATTAGTTTGATCGAAAGAAGACTTCGAGCTAAAAAGGTTCTTATTGTTATTGATGACATAGACAGTGAGATTCAATTAAATGCATTAGCTGGAGAGCGAAATTGGTTTGGTCGAGGAAGTACAATTATCGTTACGACTAGAAATGCTAATTTGTTGAATGGCCCTGGAAAAGATTATGAAAAGTATGAGGTCCGACGGTTAGACTTTGACAAATCGTTGCAACTCTTTAGTTGGCATACTTTTAAGCATCCTAACCCATTGGAGCCTTTTGTTGAAATATCAGACAAGATAGTAAGTTTTGCTGGGGGATTTCCTCTGGCTGC

Protein sequences

Name	Description	Sequence
putative disease resistance protein	putative disease resistance protein [Ipomoea batatas].	GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLAA

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017:SF20	1-173	PTHR11017:SF20,SUBFAMILY NOT NAMED	GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA
superfamily: SSF52540	1-173	SSF52540	GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA
HMMPanther: PTHR11017	1-173	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA
HMMPfam: PF00931 IPR002182	1-173	NB-ARC,NBS NB-ARC	GGVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYEKYEVRRLDFDKSLQLFSWHTFKHPNPLEPFVEISDKIVSFAGGFPLA
Gene3D: G3DSA:3.40.50.300	2-126	G3DSA:3.40.50.300	GVGKTTIAKAMYEKINGMFDGNCFLGDVRSKCLEKGCAGLKCLQEQLLCKILLTTKVEVDNVDEGISLIERRLRAKKVLIVIDDIDSEIQLNALAGERNWFGRGSTIIVTTRNANLLNGPGKDYE
FPrintScan: PR00364 IPR000767	73-87	DISEASERSIST Disease resistance protein	RLRAKKVLIVIDDID
FPrintScan: PR00364 IPR000767	167-174	DISEASERSIST Disease resistance protein	AGGFPLAA

List of References

Guanshui Chen, Daren Pan, Yifei Zhou, Sheng Lin, Xiangde Ke
Diversity and evolutionary relationship of nucleotide binding site-encoding disease-resistance gene analogues in sweet potato (Ipomoea batatas Lam.).
J. Biosci.: 2007, 32(4);713-21
PubMed:17762144 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show