PRGDB00047277 (disease resistance protein (TIR-NBS class), putative)

disease resistance protein (TIR-NBS class), putative
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	145337467 (NM_105950)
Gene Class	T
Domain Type	TIR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana disease resistance protein (TIR-NBS class), putative (AT1G72920) mRNA, complete cds.

DNA Sequence

ATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGTTTCAGAGGACTCGACACTCGTCGCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCGAAGAAAAATTCGAACTTTCAAAGACGACAAGGAGCTCGAGAATGGCCGGAGGATTTCTCCGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACTACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGGGTTCCATCACCGTGATGCCTATCTTCTACGGCGTGGATCCTTGTCATTTGAGGAGGCAGATCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCTAGAGAAGAAGATCATGAGAAAGTAGCTTCGTGGAGACGAGCATTGACCAGTTTAGCGAGTATCTCCGGCGAATGTTCATTGAAATGGGAAGATGAAGCGAATCTGGTGGACGAAATTGCTGACAAGATATCAAAAAATCTGATGACTGTTACAACAATAAGCAATGGGAGGGACCTAGTTGGGATTGATACACACATGAAGGCTCTTAACAAAAAATTGGATTTGAATTCCAACAAAAGTTTGAGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGATCAGCTTTAGCTAAATATGTTTATCAAGACATCTGTCATTGGTTGAAGGTTGGTTGGTTGAAGGTTTATCAAGATATCAAGACAGCTTCCAAACTTTATGTTTTAACTCGTTGGTTGAAGGTTGCACATTTGCTTCATAGATCACATCACTCTTTTAAAACTGAGTAG

Protein sequences

Name	Description	Sequence
disease resistance protein (TIR-NBS class), putative	disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana].	MSSPTATKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASISGECSLKWEDEANLVDEIADKISKNLMTVTTISNGRDLVGIDTHMKALNKKLDLNSNKSLRVVGIWARGYNGRSALAKYVYQDICHWLKVGWLKVYQDIKTASKLYVLTRWLKVAHLLHRSHHSFKTE

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	2-150	TIR Toll/interleukin-1 receptor homology (TIR) domain	SSPTATKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASISGE
ProfileScan: PS50104 IPR000157	7-147	TIR Toll/interleukin-1 receptor homology (TIR) domain	TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASI
Gene3D: G3DSA:3.40.50.10140	7-145	G3DSA:3.40.50.10140	TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLA
HMMSmart: SM00255 IPR000157	8-147	TIR Toll/interleukin-1 receptor homology (TIR) domain	KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASI
HMMPfam: PF01582 IPR000157	11-142	TIR Toll/interleukin-1 receptor homology (TIR) domain	VFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALT
HMMPanther: PTHR23155	20-228	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	TRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASISGECSLKWEDEANLVDEIADKISKNLMTVTTISNGRDLVGIDTHMKALNKKLDLNSNKSLRVVGIWARGYNGRSALAKYVY
HMMPanther: PTHR23155:SF344	20-228	PTHR23155:SF344	TRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDHEKVASWRRALTSLASISGECSLKWEDEANLVDEIADKISKNLMTVTTISNGRDLVGIDTHMKALNKKLDLNSNKSLRVVGIWARGYNGRSALAKYVY

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Analyses

Blast

Blast matches against Reference R-Genes. Show