PRGDB00047481 (NBS-LRR type disease resistance protein Hom-F)
| NBS-LRR type disease resistance protein Hom-F | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 38373626 (AY452687) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, LRR, Others |
| Gene Species | Glycine max |
DNA Sequence
ATGGCACTAGAATTGGTTGGTGGTGCTCTTCTTTCTGCTTTCCTTCAGGTTGCGTTTGAGAAGCTTGCTTCTCCTCAAGTTCTGGACTTCTTTCGTGGAAGAAAGCTTGATGAAAAGCTGCTCAACAACTTGGAAATCAAGCTGAACTCCATACAGGCTCTGGCTGATGATGCAGAACTAAAGCAGTTCAGAGATCCACCTGTCAGGAACTGGCTTCTTAAGGTCAAAGATGCTTTGTTTGACGCAGAGGATCTCTTGGATGAAATACAACATGAGATCTCCAAATGCCAGGTCGAAGCTGAAGCTGAAGCTGAGTCTCAAACCTGCACTTGCAAGGTACCAAATTTCTTAAAATCTTCTCCTGTTGGTTCCTTTAACAAGGAAATTAAATCAAGGATGGAACAGGTCCTTGAGGACCTTGAAAATCTTGCTAGCCAAAGTGGCTATCTAGGTTTGCAAAATGCAAGTGGTGTTGGATCAGGATTTGGTGGTGCAGTATCACTGCATTCAGAATCAACATCTTTGGTTGTTGAAAGTGTTATTTATGGCAGAGATGATGACAAAGAAATGATCTTTAATTGGCTCACATCTGACATTGACAATTGTAACAAACTATCAATACTTTCTATTGTGGGCATGGGTGGGTTGGGTAAGACCACACTTGCCCAACATGTATTCAATGACCCAAGGATAGAAAATAAATTTGATATCAAAGCTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTCAATGTAACAAGAACAATTCTGGAGGCAGTCACTAAATCAACTGATGATAGTAGAAACCGAGAAACGGTTCAGGGAAGGTTGAGAGAAAAATTGACAGGAAATAAATTTTTTCTTGTTTTGGATGATGTTTGGAACAGAAATCAAAAGGAATGGAAAGATTTGCAAACTCCTCTTAATTATGGGGCTTCAGGGAGTAAAATTGTTGTCACTACACGTGACAAGAAAGTTGCTTCAATAGTGGGATCAAATAAAACACATTGCTTAGAGCTGTTGCAAGATGATCATTGCTGGCGATTGTTCACTAAACATGCATTCCGAGATGATAGTCATCAACCAAATCCAGACTTCAAGGAGATTGGTACGAAGATAGTAGAAAAATGTAAAGGACTGCCTCTGGCCTTGACAACAATTGGAAGTCTATTACACCAAAAATCATCTATTTCAGAATGGGAAGGCATATTGAAAAGCGAGATATGGGAATTTTCAGAAGAGGATAGCTCTATTGTCCCTGCTTTAGCACTAAGCTATCACCACCTTCCTTCCCATCTCAAGAGATGTTTTGCTTATTGCGCCTTATTCCCCAAAGATTACAGGTTTGACGAGGAGGGTTTAATTCAGCTGTGGATGGCGGAAAACTTTTTACAATGTCATCAACAGAGTAGGAGTCCAGAAAAAGTCGGTGAACAATACTTCAACGATCTTTTGTCAAGGTCCTTCTTTCAACAATCAAGCACCGTAGAGAGAACACCTTTTGTCATGCATGACCTTCTCAATGATTTGGCAAAATATGTTTGTGGGGACATCTGCTTCAGGTTGGAAAATGATCAAGCAACAAATATACCGAAGACAACCCGTCATTTTTCAGTTGCAAGCGATCACGTTACATGCTTTGATGGGTTTCGAACTTTATACAATGCTGAAAGGTTACGCACATTTATGTCATTAAGTGAGGAAATGAGTTTTCGTAACTACAATCTTTGGTATTGCAAGATGTCAACACGTGAATTATTTTCCAAGTTTAAGTTCTTACGTGTCTTATCTCTGTCTGGTTATTCTAACCTAACAAAGGTGCCTAACTCTGTGGGTAATCTTAAATATCTCAGTTCGTTAGACTTATCCCATACTGAAATAGTAAAACTACCTGAATCAATATGTTCACTCTACAACTTGCAAATACTGAAGCTAAATGGTTGTGAACATTTGAAGGAGCTGCCCTCAAATTTGCATAAACTCACTGATTTGCATCGCCTTGAATTAATAGATACTGAAGTGAGAAAGGTACCAGCACATTTGGGAAAACTGAAGTATCTTCAAGTATTAATGAGTTCGTTTAATGTTGGCAAAAGTAGGGAGTTCAGTATCCAGCAGCTAGGAGAACTCAATCTTCATGGAAGTCTATCAATAAGGCAACTGCAGAATGTTGAGAATCCATCAGATGCATTAGCGGTGGATTTAAAAAATAAAACACACCTTGTCGAGCTAGAGTTAGAATGGGATTCAGACTGGAACCCTGATGATTCAACAAAAGAAAGGGATGTAATCGAGAATCTACAGCCTTCCAAACACTTGGAGAAGTTGACGATGAGCAACTATGGGGGTAAACAATTTCCAAGGTGGTTATTCAACAATTCATTATTGCGTGTGGTATCCTTAACCCTGAAGAACTGTAAAGGTTTCCTATGTTTGCCTCCCCTTGGACGTTTGCCATCTCTGAAGGAGCTTTCAATTGAAGGGCTTGATGGGATTGTGAGTATTAATGCTGATTTTTTGGGGAGTAGCTCTTGTTCATTTACATCCTTGGAATCTTTGGAGTTCTCCGATATGAAGGAATGGGAAGAATGGGAATGTAAAGGTGTGACAGGTGCTTTTCCACGTCTTCGACGTCTTTCTATAGAGCGTTGTCCCAAGCTGAAAGGGCACTTGCCAGAGCAACTATGTCATTTAAATTCTCTAAAGATTTCTGGGTGGGACTCTCTAACGACTATTCCGCTAGATATCTTCCCAATACTCAAGGAGCTTCAGATCTGGGAGTGTCCTAATCTACAGAGGATTTCACAGGGGCAGGCTCTTAATCATCTCGAGACTCTGAGTATGAGAGAGTGCCCCCAATTAGAATCATTGCCTGAAGGAATGCATGTCCTCCTTCCATCTCTTGATTCTCTGTGGATAAAGGATTGTCCAAAAGTTGAAATGTTTCCCGAAGGAGGTTTGCCATCAAATTTAAAAAGTATGGGTCTCTATGGTGGTAGTTACAAACTTATCTCCTTATTGAAAAGTGCCTTGGGAGGCAATCACTCTCTAGAAAGGTTAGTTATTGGAGGAGTGGATGTTGAGTGTCTTCCTGACGAAGGTGTACTGCCACACTCTCTTGTTAATCTATGGATAAGGGAGTGTGGAGATCTAAAAAGACTGGACTACAGAGGTCTCTGCCACCTCTCCTCTCTCAAGACATTGACTCTTTGGGACTGCCCCAGGCTCGAATGCTTACCAGAGGAGGGTCTGCCCAAATCCATTTCAACTTTGGGAATTCTCAATTGTCCGTTGCTCAAACAACGTTGCCGGGAACCCGAAGGCGAAGACTGGCCAAAGATTGCTCACATTGAAGAGGTGTTTATATGGAAGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| NBS-LRR type disease resistance protein Hom-F | NBS-LRR type disease resistance protein Hom-F [Glycine max]. | MALELVGGALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPKSISTLGILNCPLLKQRCREPEGEDWPKIAHIEEVFIWK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF236 | 9-976 | PTHR23155:SF236,DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) | ALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDC |
| HMMPanther: PTHR23155 | 9-976 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ALLSAFLQVAFEKLASPQVLDFFRGRKLDEKLLNNLEIKLNSIQALADDAELKQFRDPPVRNWLLKVKDALFDAEDLLDEIQHEISKCQVEAEAEAESQTCTCKVPNFLKSSPVGSFNKEIKSRMEQVLEDLENLASQSGYLGLQNASGVGSGFGGAVSLHSESTSLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCHQQSRSPEKVGEQYFNDLLSRSFFQQSSTVERTPFVMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDC |
| superfamily: SSF52540 | 174-414 | SSF52540 | SLVVESVIYGRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEE |
| Gene3D: G3DSA:3.40.50.300 | 183-328 | G3DSA:3.40.50.300 | GRDDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVAS |
| HMMPfam: PF00931 IPR002182
|
185-467 | NB-ARC,NBS NB-ARC
|
DDDKEMIFNWLTSDIDNCNKLSILSIVGMGGLGKTTLAQHVFNDPRIENKFDIKAWVCVSDEFDVFNVTRTILEAVTKSTDDSRNRETVQGRLREKLTGNKFFLVLDDVWNRNQKEWKDLQTPLNYGASGSKIVVTTRDKKVASIVGSNKTHCLELLQDDHCWRLFTKHAFRDDSHQPNPDFKEIGTKIVEKCKGLPLALTTIGSLLHQKSSISEWEGILKSEIWEFSEEDSSIVPALALSYHHLPSHLKRCFAYCALFPKDYRFDEEGLIQLWMAENFLQCH |
| FPrintScan: PR00364 IPR000767
|
207-222 | DISEASERSIST Disease resistance protein
|
ILSIVGMGGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
280-294 | DISEASERSIST Disease resistance protein
|
KLTGNKFFLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
377-391 | DISEASERSIST Disease resistance protein
|
CKGLPLALTTIGSLL |
| superfamily: SSF52058 | 502-929 | SSF52058,LRR | VMHDLLNDLAKYVCGDICFRLENDQATNIPKTTRHFSVASDHVTCFDGFRTLYNAERLRTFMSLSEEMSFRNYNLWYCKMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHGSLSIRQLQNVENPSDALAVDLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKISGWDSLTTIPLDIFPILKELQIWECP |
| Gene3D: G3DSA:3.80.10.10 | 580-714 | G3DSA:3.80.10.10 | KMSTRELFSKFKFLRVLSLSGYSNLTKVPNSVGNLKYLSSLDLSHTEIVKLPESICSLYNLQILKLNGCEHLKELPSNLHKLTDLHRLELIDTEVRKVPAHLGKLKYLQVLMSSFNVGKSREFSIQQLGELNLHG |
| FPrintScan: PR00364 IPR000767
|
612-628 | DISEASERSIST Disease resistance protein
|
GNLKYLSSLDLSHTEIV |
| HMMPfam: PF00560 IPR001611
|
639-661 | LRR_1 Leucine-rich repeat
|
NLQILKLNGCEHLKELPSNLHKL |
| Gene3D: G3DSA:3.80.10.10 | 734-904 | G3DSA:3.80.10.10 | DLKNKTHLVELELEWDSDWNPDDSTKERDVIENLQPSKHLEKLTMSNYGGKQFPRWLFNNSLLRVVSLTLKNCKGFLCLPPLGRLPSLKELSIEGLDGIVSINADFLGSSSCSFTSLESLEFSDMKEWEEWECKGVTGAFPRLRRLSIERCPKLKGHLPEQLCHLNSLKIS |
| Gene3D: G3DSA:3.80.10.10 | 908-1086 | G3DSA:3.80.10.10 | SLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPK |
| superfamily: SSF52058 | 908-1116 | SSF52058,LRR | SLTTIPLDIFPILKELQIWECPNLQRISQGQALNHLETLSMRECPQLESLPEGMHVLLPSLDSLWIKDCPKVEMFPEGGLPSNLKSMGLYGGSYKLISLLKSALGGNHSLERLVIGGVDVECLPDEGVLPHSLVNLWIRECGDLKRLDYRGLCHLSSLKTLTLWDCPRLECLPEEGLPKSISTLGILNCPLLKQRCREPEGEDWPKIAH |
List of References
Tom Ashfield, Laura E Ong, Kan Nobuta, Christopher M Schneider, Roger W Innes
Convergent evolution of disease resistance gene specificity in two flowering plant families.
Plant Cell: 2004, 16(2);309-18
PubMed:14742871
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.
