PRGDB00047901 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981211 (EU939869)
Gene Class NL
Domain Type NBS, LRR
Gene Species Pyrus betulifolia

Comment?

Pyrus betulifolia clone Pbtf1 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCAGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAAATTCATCATGAGTTTGAATTCAAAAGTTTCCTTGCCGACGTTAGCGACACTACAAGTAAACATGGCCTGGTTCATTTGCAAAAAAAACTAAGTTCTGACATCATGGATCAAGAGATTAAAATAAGCACTGTTGATGAAGGTATCTGTTGGATAGAAAAGCAATTTTCACATAGAAGGGTACTTGTCATCATGGACAACATAGATGGAGTGGAACAACTCAATGCAATAGCTGGAAATCACAAGTGGTTTGGTCCAGGAAGTAGAATTATCATAACGACACGAGATAAACATCTACTAAAAGTGGACAAAGTATATCCGGCTAAGATATTGAATAAAGAAGAAGCTCTGGAACTCTTTAGTTGGCATGCATTTGGAAATAGACGGCCTAACGAAGGATATTTTCAACTCTCAGAAAAAGTTGTTTCTTATTGTGGAGGTTTGCCCTTAGCACT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus betulifolia].

GSGKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKVYPAKILNKEEALELFSWHAFGNRRPNEGYFQLSEKVVSYCGGLPLAL


Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-165 SSF52540

GSGKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKVYPAKILNKEEALELFSWHAFGNRRPNEGYFQLSEKVVSYCGGLPLAL

HMMPfam: PF00931
IPR002182
1-165 NB-ARC,NBS
NB-ARC

GSGKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKVYPAKILNKEEALELFSWHAFGNRRPNEGYFQLSEKVVSYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-118 G3DSA:3.40.50.300

GSGKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKV

HMMPanther: PTHR11017:SF20
3-165 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKVYPAKILNKEEALELFSWHAFGNRRPNEGYFQLSEKVVSYCGGLPLAL

HMMPanther: PTHR11017
3-165 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTAAKAIYNQIHHEFEFKSFLADVSDTTSKHGLVHLQKKLSSDIMDQEIKISTVDEGICWIEKQFSHRRVLVIMDNIDGVEQLNAIAGNHKWFGPGSRIIITTRDKHLLKVDKVYPAKILNKEEALELFSWHAFGNRRPNEGYFQLSEKVVSYCGGLPLAL






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Analyses

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