PRGDB00047902 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981209 (EU939868)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus hybrid cultivar

Comment?

Pyrus hybrid cultivar clone Ph-Xzl-2 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCTGGTAAAACAACGCTTGCTAGAACCATTTATAGCACATACCATCATAGTTTCCATGGTCAATGTTACCTTGAGGAGGTGAGGAGTAAAAAGAAAAATATGGTCAGTCTGCAAGAACAACTTCTTCGAGATATTTTGAAATGGCCTGACATTAAAATAAGTAGTGTTGCCGAAGGGACCAAGGAGATAGAGAAAAGACTTGGAAGCATGAAGGTACTCATCGTAGTTGATGACATAGATGATGCGGACCAATTAGATGAATTGGCGATAGAACATGACTCGTTTGGTCCAGGAAGTAGGATTATTTTAATAGCAAGAGATGAACAAGTGCTGAATATACAGAAGGTGCAAAAAAAATATAAGGCACAAACGATGACGGATGAAGAAGCTCTTGAGCTCCTTAGTTGGCATGCGTTTGGAAATCATTGTCCTGATAAAGAATATATTGAACTTGCAAGAGGTGTTGTTGATTATTGTGGAGGATTACCATTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus hybrid cultivar].

GSGKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPDKEYIELARGVVDYCGGLPLAL

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-167 SSF52540

GSGKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPDKEYIELARGVVDYCGGLPLAL

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GSGKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPDKEYIELARGVVDYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-146 G3DSA:3.40.50.300

GSGKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPD

HMMPanther: PTHR11017:SF20
3-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPDKEYIELARGVVDYCGGLPLAL

HMMPanther: PTHR11017
3-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTLARTIYSTYHHSFHGQCYLEEVRSKKKNMVSLQEQLLRDILKWPDIKISSVAEGTKEIEKRLGSMKVLIVVDDIDDADQLDELAIEHDSFGPGSRIILIARDEQVLNIQKVQKKYKAQTMTDEEALELLSWHAFGNHCPDKEYIELARGVVDYCGGLPLAL

FPrintScan: PR00364
IPR000767
67-81 DISEASERSIST
Disease resistance protein

RLGSMKVLIVVDDID

FPrintScan: PR00364
IPR000767
160-167 DISEASERSIST
Disease resistance protein

CGGLPLAL






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