PRGDB00047906 (nucleotide binding site leucine-rich repeat disease resistance protein)

nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	209981201 (EU939864)
Gene Class	TNL
Domain Type	NBS, LRR, TIR, Others
Gene Species	Pyrus hybrid cultivar
	Comment?

Pyrus hybrid cultivar clone Ph-Qys-1 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTTCTGGTAAAACAACGGTTGCAAAAGTAATTTTCAACAAATATCAGCACATGTTTGATGGTACAAGTTTTCTTCCAAATGTGAGAAAAGATGAGGAACTGGTTGATTCACAAAACAAACTTCTTTCTGATATCTTGAGATCGGGAAACATGAAGGTTAGTAGGATCTATGAAGGGACCAAGGAGATTAAAAGAAGACTTGGCAACAAAAGAGTACTTGTTATAGTAGATGACGTAGACCGCGATGCACAGTTAGATGCATTAGCTCTAAGGCATGACTCATTTGGCCCAGGAAGTAGAATTATTGTAACAACAAGGGATCAACATTTGCTAAAGATACTTAACGTGGAGGCGATTTGTCCTTTGCAAGAAATGAATAAAGAAGAAGCTCTTGAGCTATTTAGTTGGCATGCCTTTAGAAACAATTATCCTAATGCAGAGTATATTGAGCTCTCAAGAAAGGCTGTTGGCTACTGTGGAGGTTTGCCATTAGCCCT

Protein sequences

Name	Description	Sequence
nucleotide binding site leucine-rich repeat disease resistance protein	nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus hybrid cultivar].	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRNNYPNAEYIELSRKAVGYCGGLPLAL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017	1-166	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRNNYPNAEYIELSRKAVGYCGGLPLAL
Gene3D: G3DSA:3.40.50.300	1-112	G3DSA:3.40.50.300	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLK
HMMPanther: PTHR11017:SF130	1-166	PTHR11017:SF130,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRNNYPNAEYIELSRKAVGYCGGLPLAL
HMMPfam: PF00931 IPR002182	1-166	NB-ARC,NBS NB-ARC	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRNNYPNAEYIELSRKAVGYCGGLPLAL
superfamily: SSF52540	1-166	SSF52540	GSGKTTVAKVIFNKYQHMFDGTSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTKEIKRRLGNKRVLVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRNNYPNAEYIELSRKAVGYCGGLPLAL
FPrintScan: PR00364 IPR000767	66-80	DISEASERSIST Disease resistance protein	RLGNKRVLVIVDDVD
FPrintScan: PR00364 IPR000767	159-166	DISEASERSIST Disease resistance protein	CGGLPLAL

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Analyses

Blast

Blast matches against Reference R-Genes. Show