PRGDB00048096 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084620 (AM931347)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Musa acuminata subsp. siamea
	Comment?

Musa acuminata subsp. siamea partial nbs gene for NBS-LRR disease resistance protein, cultivar Khae Phrae, clone N211_SM.

DNA Sequence

GGCATGGGTGGGGTTGGCAAGACTACTCTTGCTCAGCAAGCCTACGACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACGACTTCAACGTGGAAAGGCTTACCAAAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTCTTAAGAAGAACTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGTCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTAAAAAGATTGCAAAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAGTCAGCTATTGGAAATTGTTCAAGAAATGTGCATTTGGGTCCGAAGACGCCGGTGAATTTCCACATCTGGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGGTTGCCCTTGGCGGCAAAGACG

Protein sequences

Name	Description	Sequence
NBS-LRR disease resistance protein	NBS-LRR disease resistance protein [Musa acuminata subsp. siamea].	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAKMVGNPIPLGGLDEVSYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-173	SSF52540	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAKMVGNPIPLGGLDEVSYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT
HMMPanther: PTHR11017	1-172	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAKMVGNPIPLGGLDEVSYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK
HMMPanther: PTHR11017:SF28	1-172	PTHR11017:SF28	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAKMVGNPIPLGGLDEVSYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK
Gene3D: G3DSA:3.40.50.300	1-115	G3DSA:3.40.50.300	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKI
HMMPfam: PF00931 IPR002182	1-172	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQQAYDHERVKDYFQHEVWVCVSDDFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAKMVGNPIPLGGLDEVSYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK
FPrintScan: PR00364 IPR000767	69-83	DISEASERSIST Disease resistance protein	NLTSKRFLLVLDDVW
FPrintScan: PR00364 IPR000767	164-173	DISEASERSIST Disease resistance protein	LKGLPLAAKT

List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show