PRGDB00048101 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084610 (AM931342)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Musa ABB Group
	Comment?

Musa ABB Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Bluggoe, clone N192_BG.

DNA Sequence

GGAATGGGGGGTGTCGGCAAAACTACTCTTGCTCAGCAAGCGTACAACCACGCGAGGGTGCAGGACTGTTTTCAGCTTAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCAGGAATACGTGTGATCTCAATAACTTTGAGACACTTCAAGTGGTAGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAGCGAGGACAGCCTGAAATGGGAAAGATTTTGTGCACCATTGAAGCACGGAGAACCCGGAAGCAAGATTTTGGTTACGACTCGCTCTAAAAAGATTGCAGACATGGTTGGCAATCCGTTCCCTCTAGATGGTCTGGATGACGCCAGCTATTGGGAATTTTTCAAGCAATGTGCATTTGGTTCCGAATACGCCGGTGAATGTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTTACAGGTTGAATGGGCTTCCCTCTTGCTGCAAAGACG

Protein sequences

Name	Description	Sequence
NBS-LRR disease resistance protein	NBS-LRR disease resistance protein [Musa ABB Group].	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPSCCKD

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00931 IPR002182	1-169	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPS
superfamily: SSF52540	1-161	SSF52540	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIA
Gene3D: G3DSA:3.40.50.300	1-119	G3DSA:3.40.50.300	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMV
HMMPanther: PTHR11017:SF28	1-168	PTHR11017:SF28	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLP
HMMPanther: PTHR11017	1-168	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFETLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLP

List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show