PRGDB00048113 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084586 (AM931330)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa textilis

Comment?

Musa textilis partial nbs gene for NBS-LRR disease resistance protein, clone N131_TX.

DNA Sequence

GGTATGGGGGGGGTGGGAAAGACCACTCTGGCACGGAAGATATACGATGATGAATGGATAAAGGAGAACTTCCCCTTACGAATTTGGTTGTATGTCTCCAACAATTACTTGGAGAACCAGTTGCTGGAAGAGGTAATTAGATGTGCAGGAAGAGACACTGATGGTTTTGAATCCACTGCGGCGCTTCAGACTCGAGTAGTTTCTCTCCTGTCGACAAACTCCCTTATAGTACTGGATGACGTATGGTGTGCAGATGTGTGGGAGAATTTACTCAGGAAACCTGTAATGAATGGAGTAGGCAGCAGCAAGATCGTGGTTACCACCAGAGATGCCGGCATCGCCAGAAGCATGAATGCTTGCATCTACCATGTTGAGCAAATAGACGAAGAGAGTGGCTGGGAACTGCTCCGAAAAATGGCTCTCGCAGATGGTACGGAGGATGAGATCTCAACGTTGAAAGAGATTGGGGTTGAGATCGTCAAAAGATGCGACGGGTTCCCGTTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa textilis].

GMGGVGKTTLARKIYDDEWIKENFPLRIWLYVSNNYLENQLLEEVIRCAGRDTDGFESTAALQTRVVSLLSTNSLIVLDDVWCADVWENLLRKPVMNGVGSSKIVVTTRDAGIARSMNACIYHVEQIDEESGWELLRKMALADGTEDEISTLKEIGVEIVKRCDGFPLAAKT


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-169 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLARKIYDDEWIKENFPLRIWLYVSNNYLENQLLEEVIRCAGRDTDGFESTAALQTRVVSLLSTNSLIVLDDVWCADVWENLLRKPVMNGVGSSKIVVTTRDAGIARSMNACIYHVEQIDEESGWELLRKMALADGTEDEISTLKEIGVEIVKRCDGFPLA

HMMPanther: PTHR11017:SF20
1-169 PTHR11017:SF20,SUBFAMILY NOT NAMED

GMGGVGKTTLARKIYDDEWIKENFPLRIWLYVSNNYLENQLLEEVIRCAGRDTDGFESTAALQTRVVSLLSTNSLIVLDDVWCADVWENLLRKPVMNGVGSSKIVVTTRDAGIARSMNACIYHVEQIDEESGWELLRKMALADGTEDEISTLKEIGVEIVKRCDGFPLA

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

GMGGVGKTTLARKIYDDEWIKENFPLRIWLYVSNNYLENQLLEEVIRCAGRDTDGFESTAALQTRVVSLLSTNSLIVLDDVWCADVWENLLRKPVMNGVGSSKIVVTTRDAGIARSMNACIYHVEQIDEESGWELLRKMALADGTEDEISTLKEIGVEIVKRCDGFPLAAK

superfamily: SSF52540
1-172 SSF52540

GMGGVGKTTLARKIYDDEWIKENFPLRIWLYVSNNYLENQLLEEVIRCAGRDTDGFESTAALQTRVVSLLSTNSLIVLDDVWCADVWENLLRKPVMNGVGSSKIVVTTRDAGIARSMNACIYHVEQIDEESGWELLRKMALADGTEDEISTLKEIGVEIVKRCDGFPLAAKT


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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