PRGDB00048122 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084568 (AM931321)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Musa acuminata
	Comment?

Musa acuminata partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Mas, clone N82_MS.

DNA Sequence

GGAATGGGGGGGGTCGGGAAAACGACGCTAGCTCAGCTTGTATATAACGATCCCAGGGTGTCCAACTACTTCGATACGAGGGGATGGATCTGTGTCTCTGAAGAATTTGATGTTGTTGGTTTAACACGAAAGATCTTGGTGTCCTTCTTCAAAACCACAGTTGATTACACAGAATTAAATGAGCTTCAACAAGAACTAAAAGAAAATTTGCAGGGAAAGAAGTTTTTGCCTGTTTTGGATGATGTTTGGAACGAGAAACCTAGTCTTTGGGAGTTGGTGAAAGTCCCCTTACTCAAGGCTGGAGTGGGTAAAGTCATAGTGACTACTCGGAATGAATGTGTTGCCAGAATCATGCAGACGATGGAGCCTTTGAGCTTGAACATCTTATCATTCGACAAATGCTGGATGTTGTTCGAGAAGCTTGCCTTGGAAAGCTTAGAATCCAGCAGCAGGCATAACAATTTGGTGGACATCGGTCGGAAGATCGTCGAGAAGTGCAAAGGCTTACCTCTCGCGGCAAAGACG

Protein sequences

Name	Description	Sequence
NBS-LRR disease resistance protein	NBS-LRR disease resistance protein [Musa acuminata].	GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAKT

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-175	SSF52540	GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAKT
HMMPfam: PF00931 IPR002182	1-174	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAK
HMMPanther: PTHR23155	1-158	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDI
HMMPanther: PTHR23155:SF121	1-158	PTHR23155:SF121,SUBFAMILY NOT NAMED	GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDI
FPrintScan: PR00364 IPR000767	69-83	DISEASERSIST Disease resistance protein	NLQGKKFLPVLDDVW
FPrintScan: PR00364 IPR000767	166-175	DISEASERSIST Disease resistance protein	CKGLPLAAKT

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Analyses

Blast

Blast matches against Reference R-Genes. Show