PRGDB00048340 (F-box protein)

F-box protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	142942393 (EF514212)
Gene Class	NL
Domain Type	LRR, NBS, Others
Gene Species	Solanum tuberosum
	Comment?

Solanum tuberosum strain P6/210 contig R1, complete sequence.

DNA Sequence

ATGAAGACTGTCATTGCTCGTACATCATCAAAACTGGCAAGGACTCCGAGGATGAATGAAGAAATTGTTGGGTTTGAGGATGTCATAGAAAATTTAAGAAAAAAACTACTGAGTGAAACCAAAGGGCAAGATGTCATTTCAATTCACGGCATGCCAGGTCTAGGTAAGACGACTTTAGCCAACAGACTCTATTCTGACAGGTCAGTTGTCTCTCAATTTGATATTTGTGCACAATGCTGTGTGTCTCAAGTATATTCGTATAAGGACTTGTTATTGTCCTTGCTACGTGATGCTATTGGTGACGAATCTGGGAGCAGAGAACTGCCTGACAATGAATTAGCTGATATGCTTCGCAAAACTTTATTGCCCCGAAGGTACCTTATCCTTGTTGATGACGTGTGGGACAATAGTGCTTGGGATGATTTAAGAGGTTGTTTTCCAGATGTCAATAACAGAAGCAGAATCATTCTAACGACAAGACATCATGAAGTTGCCAAATATGCTAGTGTTCATAGTGATCCCCTTCATCTTCGTATGTTTTACGAAGATGAAAGTTGGAAGTTGCTTGAAAAGAAAGTGTTTGGTGAACAAAGCTGCTCCCCTCTCCTAAAAGATGTTGGGCTAAGAATAGCAAAATTGTGTGGAAAACTCCCTCTTTCAATTGTTTTTGTGGCTGGTACTCTGTCTGAGATGGAAAAGGAAGTAGAATCATTTTTAGAGGATAGAGTGATTGACATTTCAAGGTTAATACGGTTATGGATATCAGAATCATTTATAAAAAGTAGTGAAGGCAGAAGCTTGGAGGATATAGCAGAAGGTTACTTGGAGAATCTCATTGGAAGAAATCTAGTAATGGTTACTCAGAGGGCCGATTCAGATGGTATGGTCAAAGCATGTCGCCTTCATGATGTATTACTCGACTTCTGCAAGAAAAGAGCAGCTGAGGAGAATTTTCTACTATGTATAAAACGGGATCAGAGTACCAAAGCTGTTATTTCTCACAAGCAGCAAGCTCACTTAGCCTTCAGTAAAATGGATAATCTTGTAGAATGGAGTGCATCTTCCTCACTTGTTGGCTCTGTAATTTTTAAGAGTTATGACCCATACTTTGCCCGTTGTCCCTTATCCTCTCATGCTTTTGCACTTTCACACATTTTAATAAATTTCAAGTTTCTTAAAGTATTGGATTTGGAGCACCAGGTTGTTATTGATTTTAATCCCACTGAGCACTTTTACTTGAGGTATCTATCTGCACACATTGATCAGAATTCAATTCCTTCAAGCATATCCAATCTTTGGAACCTTGAAACTCTTATATTAAAGCGTACACCAGCTGGGAGACTTAACACGCTACTACTACCTAGTACAATTTGGGATATGGTTAAACTGAGACATCTGCATATTCCTAACTTTAGAGCAGAAAGTGAAGATGCATTACTTGAGAACTCAGCAAAACTTTATGATTTGGAAACCCTTTCCACTACATATTTCTCTAGTGTTGAGAAGGCAGAATTGATGCTGAGAAAAACACCTAATCTTCGAAAACTGATATGTGAAGTCCAGTTCTTAGAATACCCCAATCAGTACCATGTGTTGAATTTTCCAGTAAGGCTTGAAATGCTAAAGCTTTATCGATTTAATAACTCTAAAGTCATCCCCTTTTACATCTCTGCACCAAACCTCAAATACCTGAAACTCTCTGGCTTTTACCTGGATTCTCATTACTTATCAGAAACTGCTGATCATCTCAAGCACCTTGAGGTACTCAAACTGTACCGCGTTGAATTTGGCGATCATGGGGAATGGAAAGTGAGCAATGGCATGTTCCCTCAACTCAAAATCTTGAAACTAAATTATGTGTGCTTGATGAAATGGATTGTAGCTGATGATGCATTTCCTAACCTTGAACAATTGGTTTTGCGCGGATGTAAAGATCTTATGGAGATCCCTTTTTGTTTCATGGACATCCTTTCTCTGAAGTACATTGAGTTAGACAACTGCAACAAGTCTGTTGTCAAGTCAGCCAAGGATATAGAAGAAGCACAAGTCGAAGATAATCAAAATACTAATTTCAAGCTCGTCATCATCAAGAAAATGATATTGCAATTCGATATTTCTCATGACAAAGAGATAGATAATGCATTTAAAAGATTAGCCTCTCTTCCAGGAGTAGACTCAATTTCAATTGATATGATAGAAAAGAAACTTACTGTGGGTGGAGATATGAATGCTAATGAAGTTCGATTAGTTGTGGGGAAACTGATAGACAGTGGCATGCTGTAG

Protein sequences

Name	Description	Sequence
putative disease resistance protein	putative disease resistance protein [Solanum tuberosum].	MKTVIARTSSKLARTPRMNEEIVGFEDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPLLKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIRLWISESFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRADSDGMVKACRLHDVLLDFCKKRAAEENFLLCIKRDQSTKAVISHKQQAHLAFSKMDNLVEWSASSSLVGSVIFKSYDPYFARCPLSSHAFALSHILINFKFLKVLDLEHQVVIDFNPTEHFYLRYLSAHIDQNSIPSSISNLWNLETLILKRTPAGRLNTLLLPSTIWDMVKLRHLHIPNFRAESEDALLENSAKLYDLETLSTTYFSSVEKAELMLRKTPNLRKLICEVQFLEYPNQYHVLNFPVRLEMLKLYRFNNSKVIPFYISAPNLKYLKLSGFYLDSHYLSETADHLKHLEVLKLYRVEFGDHGEWKVSNGMFPQLKILKLNYVCLMKWIVADDAFPNLEQLVLRGCKDLMEIPFCFMDILSLKYIELDNCNKSVVKSAKDIEEAQVEDNQNTNFKLVIIKKMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMNANEVRLVVGKLIDSGML

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	4-245	SSF52540	VIARTSSKLARTPRMNEEIVGFEDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPLLKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVID
HMMPanther: PTHR23155	7-715	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	RTSSKLARTPRMNEEIVGFEDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPLLKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIRLWISESFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRADSDGMVKACRLHDVLLDFCKKRAAEENFLLCIKRDQSTKAVISHKQQAHLAFSKMDNLVEWSASSSLVGSVIFKSYDPYFARCPLSSHAFALSHILINFKFLKVLDLEHQVVIDFNPTEHFYLRYLSAHIDQNSIPSSISNLWNLETLILKRTPAGRLNTLLLPSTIWDMVKLRHLHIPNFRAESEDALLENSAKLYDLETLSTTYFSSVEKAELMLRKTPNLRKLICEVQFLEYPNQYHVLNFPVRLEMLKLYRFNNSKVIPFYISAPNLKYLKLSGFYLDSHYLSETADHLKHLEVLKLYRVEFGDHGEWKVSNGMFPQLKILKLNYVCLMKWIVADDAFPNLEQLVLRGCKDLMEIPFCFMDILSLKYIELDNCNKSVVKSAKDIEEAQVEDNQNTNFKLVIIKKMILQFDISHDKEIDNAF
HMMPanther: PTHR23155:SF121	7-715	PTHR23155:SF121,SUBFAMILY NOT NAMED	RTSSKLARTPRMNEEIVGFEDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPLLKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIRLWISESFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRADSDGMVKACRLHDVLLDFCKKRAAEENFLLCIKRDQSTKAVISHKQQAHLAFSKMDNLVEWSASSSLVGSVIFKSYDPYFARCPLSSHAFALSHILINFKFLKVLDLEHQVVIDFNPTEHFYLRYLSAHIDQNSIPSSISNLWNLETLILKRTPAGRLNTLLLPSTIWDMVKLRHLHIPNFRAESEDALLENSAKLYDLETLSTTYFSSVEKAELMLRKTPNLRKLICEVQFLEYPNQYHVLNFPVRLEMLKLYRFNNSKVIPFYISAPNLKYLKLSGFYLDSHYLSETADHLKHLEVLKLYRVEFGDHGEWKVSNGMFPQLKILKLNYVCLMKWIVADDAFPNLEQLVLRGCKDLMEIPFCFMDILSLKYIELDNCNKSVVKSAKDIEEAQVEDNQNTNFKLVIIKKMILQFDISHDKEIDNAF
Gene3D: G3DSA:3.40.50.300	24-161	G3DSA:3.40.50.300	GFEDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRH
HMMPfam: PF00931 IPR002182	26-237	NB-ARC,NBS NB-ARC	EDVIENLRKKLLSETKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLSLLRDAIGDESGSRELPDNELADMLRKTLLPRRYLILVDDVWDNSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFYEDESWKLLEKKVFGEQSCSPLLKDVGLRIAKLCGKLPLSIVFVAGTLSEMEKEVES
FPrintScan: PR00364 IPR000767	45-60	DISEASERSIST Disease resistance protein	VISIHGMPGLGKTTLA
FPrintScan: PR00364 IPR000767	120-134	DISEASERSIST Disease resistance protein	TLLPRRYLILVDDVW
FPrintScan: PR00364 IPR000767	214-228	DISEASERSIST Disease resistance protein	CGKLPLSIVFVAGTL
superfamily: SSF52058	300-673	SSF52058,LRR	RLHDVLLDFCKKRAAEENFLLCIKRDQSTKAVISHKQQAHLAFSKMDNLVEWSASSSLVGSVIFKSYDPYFARCPLSSHAFALSHILINFKFLKVLDLEHQVVIDFNPTEHFYLRYLSAHIDQNSIPSSISNLWNLETLILKRTPAGRLNTLLLPSTIWDMVKLRHLHIPNFRAESEDALLENSAKLYDLETLSTTYFSSVEKAELMLRKTPNLRKLICEVQFLEYPNQYHVLNFPVRLEMLKLYRFNNSKVIPFYISAPNLKYLKLSGFYLDSHYLSETADHLKHLEVLKLYRVEFGDHGEWKVSNGMFPQLKILKLNYVCLMKWIVADDAFPNLEQLVLRGCKDLMEIPFCFMDILSLKYIELDNCNKSVVK
Gene3D: G3DSA:3.80.10.10	381-516	G3DSA:3.80.10.10	ALSHILINFKFLKVLDLEHQVVIDFNPTEHFYLRYLSAHIDQNSIPSSISNLWNLETLILKRTPAGRLNTLLLPSTIWDMVKLRHLHIPNFRAESEDALLENSAKLYDLETLSTTYFSSVEKAELMLRKTPNLRKL
Gene3D: G3DSA:3.80.10.10	537-669	G3DSA:3.80.10.10	RLEMLKLYRFNNSKVIPFYISAPNLKYLKLSGFYLDSHYLSETADHLKHLEVLKLYRVEFGDHGEWKVSNGMFPQLKILKLNYVCLMKWIVADDAFPNLEQLVLRGCKDLMEIPFCFMDILSLKYIELDNCNK
FPrintScan: PR00364 IPR000767	654-670	DISEASERSIST Disease resistance protein	MDILSLKYIELDNCNKS

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Analyses

Blast

Blast matches against Reference R-Genes. Show