PRGDB00048350 (Rpp13)

Rpp13
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	126032739 (EF368149)
Gene Class	CNL
Domain Type	LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Pu2_16 disease resistance protein Rpp13 variant (Rpp13) gene, partial cds.

DNA Sequence

GAGACGTGGCTATCAAGAAATCTAAAGAGCTCAACTTTGTAAATGTGTATAACGATCATGTGGCCCAACATTCTTCTACTACTTGCAGAAGGGAAGTGGTTCACCATCAGGTCAAGAGATACTCATCTGAGAAACGCAAGAACAAACGGATGCGATCCTTCTTAAACTTTGGATTATACAATTTGGTAGGGCCTGATTTTGAAACAACGAAGCTACTTCGAGTGCTTGATGTCAGAAGGCTTGAGGTTCCTTCGAAAATTATTGGGGATCAGATCCACTTGAGGTACCTTGGAATTGGTAGTTATTCTCTCCGCGGTATAGCAGCTATTATATCTAAGTTACGGTTTCTACAAACACTAGAGGCAGCTTACAAATATTTCATCGAGGAAACAATCGATCTCCGTAAGCTCACATCATTAAGACATGTCATAGGAAAATTCGTTGGAGAGTTGCTTATAGGCGACGCAGCGAACCTTCAGACCTTGAGGTCTATCTGCTCTGACAGCTGGAACAAACTAAAACCTGAGTTGCTCATAAATCTTCGAGATTTGGAGATCTATGACAACTATAAGTCAAAGGAGGGAAGAGTTTCTGTGAGCTGGGCTTCCTTGACTAAACTGAGAAATCTTCGTGTTCTGAGGCTGATGGCGAATAATGGCATCTATTTATCGTTGAAATCGGAAGAAGCAGTTAGGTCCATGGATGTGATATCATCCAGTCTTGTATCCGTGACACTGGATGCAATAACTTTCCAGGAAGACCCAATGCCTTTTTTGCAGAAAATGCCGAGACTGGAAGATCTAATCTTCAAAAATTGTGACTACTGGGGAGGGAAGATGAACGTCAGCGAACAAGGTTTTGGTAGGCTGAGGAAGCTTCAATTGGTCATGAAAAGTTTAGATGAGTTGCAGATAGAAGAAGAGGCCATGCC

Protein sequences

Name	Description	Sequence
disease resistance protein Rpp13 variant	disease resistance protein Rpp13 variant [Arabidopsis thaliana].	DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017	1-310	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP
HMMPanther: PTHR11017:SF14	1-310	PTHR11017:SF14	DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP
superfamily: SSF52047	54-306	SSF52047,LRR	LNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEE
Gene3D: G3DSA:3.80.10.10	65-293	G3DSA:3.80.10.10	DFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQ

List of References

Jing Ding, Weili Zhang, Zhiqiang Jing, Jian-Qun Chen, Dacheng Tian
Unique pattern of R-gene variation within populations in Arabidopsis.
Mol. Genet. Genomics: 2007, 277(6);619-29
PubMed:17277944 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show