PRGDB00048981 (Pto)

Pto
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	70913104 (DQ019178)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species	Solanum chmielewskii
	Comment?

Lycopersicon chmielewskii clone chmPto Pto disease resistance protein (Pto) gene, partial cds.

DNA Sequence

ACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGTTGTAAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCTTCCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAGAGCAATTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAAAGGAACTCTCGGCTACCTTGACCCTGAATATTTTATAAAGGGACGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCA

Protein sequences

Name	Description	Sequence
Pto disease resistance protein	Pto disease resistance protein [Lycopersicon chmielewskii].	TNSINDALSSSYLVPFESYRVPLVDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF56112 IPR011009	5-300	Kinase_like Protein kinase-like domain	NDALSSSYLVPFESYRVPLVDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKL
HMMPanther: PTHR24420	17-303	PTHR24420,FAMILY NOT NAMED	ESYRVPLVDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA
HMMPanther: PTHR24420:SF785	17-303	PTHR24420:SF785	ESYRVPLVDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA
Gene3D: G3DSA:3.30.200.20	21-109	G3DSA:3.30.200.20	VPLVDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYM
ProfileScan: PS50011 IPR000719	33-303	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA
PatternScan: PS00107 IPR017441	39-61	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	IGEGGFGKVYKGVLRDGTKVALK
HMMPfam: PF07714 IPR001245	39-297	Pkinase_Tyr Serine-threonine/tyrosine-protein kinase catalytic	IGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVL
Gene3D: G3DSA:1.10.510.10	111-298	G3DSA:1.10.510.10	NGNLKRHLYGSDLPSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLW
PatternScan: PS00108 IPR008271	150-162	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IIHRDVKSINILL

List of References

Laura E Rose, Charles H Langley, Adriana J Bernal, Richard W Michelmore
Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon). I. Functional analysis of Pto alleles.
Genetics: 2005, 171(1);345-57
PubMed:15944360 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show