PRGDB00049053 (verticillium wilt disease resistance protein)
| verticillium wilt disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 49073107 (AY615303) |
| Gene Class | Unknown |
| Domain Type | LRR, LRR, Ser-Thr Kinase, Ser-Thr Kinase |
| Gene Species | Solanum aethiopicum |
DNA Sequence
ATGAAAATGATGGCAACTCTGTACTTCCCTATGGTTCTCTTGATTCCCTCGTTACAAATCTTATCAGGATACCACATTTTCTTGGTTTCCTCTCAATGCCTTGACGATCAAAAGTCATTGTTGCTGCAGTTTAAGGGAAGCCTCCAATATGATTCTACTTTGTCAAAGAAATTGGCAAAATGGAACGACATGACAAGTGAATGTTGCAATTGGAATGGGGTTACATGCAATCTCTTTGGTCATGTCATCGCTTTGGAACTGGATGATGAGACTATTTCTAGTGGAATTGAGAATTCTAGTGCACTTTTCAGTCTTCAATATCTTGAGAGCCTAAATTTGGCTGACAACATGTTCAATGTTGGCATACCAGTTGGTATAGACAACCTCACAAACTTGAAGTACCTGAATTTATCCAATGCTGGTTTTGTCGGGCAAATTCCTATAACATTATCAAGATTAACAAGGCTAGTTACTCTTGATCTCTCAACTATTCTCCCTTTTTTTGATCAGCCACTTAAACTTGAGAATCCCAATTTGAGTCATTTCATTGAGAACTCAACAGAGCTTAGAGAGCTTTACCTTGATGGGGTTGATCTTTCGTCTCAGAGGTCTGAGTGGTGTCAATCTTTATCTTTACATTTGCCTAACTTGACCGTTTTGAGCTTGCGTGATTGTCAAATTTCAGGCCCTTTGGATGAATCACTTACTAAGCTTCACTTTCTCTCTTTTGTCCAACTTGACCAGAACAATCTCTCTAGCACAGTTCCTGAATATTTTGCCAATTTCTCGAACTTGACTACATTTGACCCTGGGCTCTGTAATCTGCAGGGAACATTTCCAGAAAGAATCTTTCAGGTATCAGTTTTAGAGATTTTGGACTTGTCAAATAACAAGTTGCTTAGTGGTAGTATTCCGAATTTTCCTCGATATGGATCTTTGAGGAGGATATTGCTAAGCTACACCAACTTTTCTGGTTCATTACCAGACTCCATTTCGAACCTTCAGAATCTGTCCAGGTTAGAGCTCTCCTATTGCAATTTCAATGGACCAATACCCTCCACCATGGCAAACCTTACCAATCTTGTTTATTTAGATTTCTCCTCCAATAACTTCACTGGTTTTATACCATATTTCCAACGGTCCAAGAAACTCACCTACTTAGACCTTTCACGTAATGGTCTAACTGGTCTCTTCTCTAGAGCTCATTCTGAAGGACTCTCAGAGTTCGTCTACATGAATTTAGGGAACAATTCACTCAACGGGATCCTTCCTGCAGAAATATTTGAGCTCCCCTCCTTGCAGCAGCTCTTTCTTAACAGCAATCAATTTGTTGGCCAAGTCGACGAGTTACGCAATGCATCCTCCTCTCCGTTAGATATAATCGATTTGAGCAACAACCACCTGAATGGTTCAATTCCCAATTCCATGTTTGAAGTTAGGAGGCTTAAGGTCCTCTCACTTTCTTCCAACTTCTTTAGTGGGACAGTGCCCCTTGACCGCATTGGGAAGCTGAGCAACCTTTCAAGACTGGAGCTTTCTTACAATAACTTGACTGTTGATGCAAGTAGCAGCAATTCAACCTCTTTCACATTTCCCCAGCTGACTATATTGAAATTGGCTTCTTGTCGGCTGCAAAAGTTCCCTGATCTCAAGAATCAGTCAAGGATGATCCACTTAGACCTTTCAAACAACCAAATACGGGGGGCAATACCAAATTGGATCTGGGGAATTGGTGGTGGAGGTCTCACCCACCTGAATCTTTCATTCAATCAGCTGGAGTACGTGGAACAGCCTTACACTGCTTCCAGCAATCTTGTAGTCCTTGATTTGCATTCCAACCGTTTAAAAGGTGACTTACTAATACCACCTTGCACTGCCATCTATGTGAACTACTCTAGCAATAATTTAAACAATTCCATCCCAACAGATATTGGAAAGTCTCTTGGTTTTGCCTCCTTTTTCTCGGTAGCAAACAATGGCATTACTGGAATAATTCCTGAATCCATATGCAACTGCAGCTACCTTCAAGTTCTTGATTTCTCTAACAATGCCTTGAGTGGAACAATACCACCATGTCTACTGGAATATAGTACAAAACTTGGAGTGCTGAATCTTGGGAACAATAAACTCAATGGTGTTATACCAGATTCATTTTCAATTGGTTGTGCTCTACAAACATTAGACCTCAGTGCGAATAACTTACAAGGCAGGCTGCCAAAATCGATTGTGAATTGTAAGTTGTTGGAGGTCCTGAATGTTGGAAATAACAAACTTGTTGATCACTTCCCATGCATGTTGAGGAACTCGAACAGTCTGAGGGTCCTAGTCCTGCGCTCCAATCAATTCAATGGAAATCTTACATGTGATATAACCACAAATAGCTGGCAGAATCTCCAGATCATAGATATTGCTTCCAACAGTTTTACTGGCGTTTTGAATGCAGGATGCTTTTCTAATTGGAGAGGAATGATGGTTGCACATGATTACGTGGAGACAGGACGCAATCATATCCAATATAAGTTCTTCCAACTAAGTAACTTTTACTATCAGGACACAGTGACATTAACCATCAAAGGCATGGAGCTGGAGCTTGTGAAGATTCTCAGGGTCTTCACATCTATTGATTTCTCTTCAAATAGATTTCAAGGAGTGATACCAAATACGGTTGGGGATCTTAGCTCGCTTTATGTTCTGAACCTGTCACACAATGCCCTTGAGGGACCAATTCCAAAATCAATCGGTAAGCTACAAATGCTTGAATCACTAGACCTGTCAACAAACCACCTGTCCGGAGAGATCCCCTCAGAGCTTGCAAGTCTCACATTCTTAGCAGCTTTGATCTTATCATTCAACAATTTGTTTGGCAAAATCCCATCAACTAATCAATTTCTAACATTCTCAGCAGATTCCTTTGAAGGAAACAGAGGCCTCTGTGGGCTCCCTCTCAACAACAGTTGCGAAAGCAAGAGATCAGAGTTCATGCCGCTGCAAACTTCGCTACCAGAGTCAGATTTTGAATGGGAGTTCATTTTCGCGGCTGTTGGATACATAGTAGGGGCAGCAAATACTATTTCAGTTGTGTGGTTTTACAAGCCAGTGAAGAAATGGTTTGATAAGCATATGGAGAAATGCTTGCTTTGGTTTACAAGAAAGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| verticillium wilt disease resistance protein | verticillium wilt disease resistance protein [Solanum aethiopicum]. | MKMMATLYFPMVLLIPSLQILSGYHIFLVSSQCLDDQKSLLLQFKGSLQYDSTLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDETISSGIENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHLNGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTSFTFPQLTILKLASCRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDLLIPPCTAIYVNYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKLNGVIPDSFSIGCALQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQFNGNLTCDITTNSWQNLQIIDIASNSFTGVLNAGCFSNWRGMMVAHDYVETGRNHIQYKFFQLSNFYYQDTVTLTIKGMELELVKILRVFTSIDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHLSGEIPSELASLTFLAALILSFNNLFGKIPSTNQFLTFSADSFEGNRGLCGLPLNNSCESKRSEFMPLQTSLPESDFEWEFIFAAVGYIVGAANTISVVWFYKPVKKWFDKHMEKCLLWFTRK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-1021 | PTHR24420,FAMILY NOT NAMED | MKMMATLYFPMVLLIPSLQILSGYHIFLVSSQCLDDQKSLLLQFKGSLQYDSTLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDETISSGIENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHLNGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTSFTFPQLTILKLASCRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDLLIPPCTAIYVNYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKLNGVIPDSFSIGCALQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQFNGNLTCDITTNSWQNLQIIDIASNSFTGVLNAGCFSNWRGMMVAHDYVETGRNHIQYKFFQLSNFYYQDTVTLTIKGMELELVKILRVFTSIDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHLSGEIPSELASLTFLAALILSFNNLFGKIPSTNQFLTFSADSFEGNRGLCGLPLNNSCESKRSEFMPLQTSLPESDFEWEFIFAAVGYIVGAA |
| HMMPanther: PTHR24420:SF473 | 1-1021 | PTHR24420:SF473,SUBFAMILY NOT NAMED | MKMMATLYFPMVLLIPSLQILSGYHIFLVSSQCLDDQKSLLLQFKGSLQYDSTLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDETISSGIENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHLNGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTSFTFPQLTILKLASCRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDLLIPPCTAIYVNYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKLNGVIPDSFSIGCALQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQFNGNLTCDITTNSWQNLQIIDIASNSFTGVLNAGCFSNWRGMMVAHDYVETGRNHIQYKFFQLSNFYYQDTVTLTIKGMELELVKILRVFTSIDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHLSGEIPSELASLTFLAALILSFNNLFGKIPSTNQFLTFSADSFEGNRGLCGLPLNNSCESKRSEFMPLQTSLPESDFEWEFIFAAVGYIVGAA |
| Gene3D: G3DSA:3.80.10.10 | 32-304 | G3DSA:3.80.10.10 | QCLDDQKSLLLQFKGSLQYDSTLSKKLAKWNDMTSECCNWNGVTCNLFGHVIALELDDETISSGIENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSI |
| HMMPfam: PF08263 IPR013210
|
35-77 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
DDQKSLLLQFKGSLQYDSTLSKKLAKWNDMTSECCNWNGVTCN |
| superfamily: SSF52047 | 84-408 | SSF52047,LRR | ALELDDETISSGIENSSALFSLQYLESLNLADNMFNVGIPVGIDNLTNLKYLNLSNAGFVGQIPITLSRLTRLVTLDLSTILPFFDQPLKLENPNLSHFIENSTELRELYLDGVDLSSQRSEWCQSLSLHLPNLTVLSLRDCQISGPLDESLTKLHFLSFVQLDQNNLSSTVPEYFANFSNLTTFDPGLCNLQGTFPERIFQVSVLEILDLSNNKLLSGSIPNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSE |
| HMMPfam: PF13516 | 214-229 | LRR_6,Leucine Rich repeat | LPNLTVLSLRDCQISG |
| HMMPfam: PF00560 IPR001611
|
289-307 | LRR_1 Leucine-rich repeat
|
LEILDLSNNKLLSGSIPNF |
| Gene3D: G3DSA:3.80.10.10 | 305-537 | G3DSA:3.80.10.10 | PNFPRYGSLRRILLSYTNFSGSLPDSISNLQNLSRLELSYCNFNGPIPSTMANLTNLVYLDFSSNNFTGFIPYFQRSKKLTYLDLSRNGLTGLFSRAHSEGLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHLNGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTSFTFPQLTIL |
| HMMPfam: PF00560 IPR001611
|
360-379 | LRR_1 Leucine-rich repeat
|
NLVYLDFSSNNFTGFIPYFQ |
| HMMPfam: PF13855 | 383-442 | LRR_8,Leucine rich repeat | KLTYLDLSRNGLTGLFSRAHSEGLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQ |
| FPrintScan: PR00019 | 384-397 | LEURICHRPT,Leucine-rich repeat signature | LTYLDLSRNGLTGL |
| superfamily: SSF52058 | 405-618 | SSF52058,LRR | GLSEFVYMNLGNNSLNGILPAEIFELPSLQQLFLNSNQFVGQVDELRNASSSPLDIIDLSNNHLNGSIPNSMFEVRRLKVLSLSSNFFSGTVPLDRIGKLSNLSRLELSYNNLTVDASSSNSTSFTFPQLTILKLASCRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGD |
| HMMPfam: PF00560 IPR001611
|
458-478 | LRR_1 Leucine-rich repeat
|
LDIIDLSNNHLNGSIPNSMFE |
| Gene3D: G3DSA:3.80.10.10 | 538-619 | G3DSA:3.80.10.10 | KLASCRLQKFPDLKNQSRMIHLDLSNNQIRGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDL |
| HMMPfam: PF00560 IPR001611
|
557-574 | LRR_1 Leucine-rich repeat
|
IHLDLSNNQIRGAIPNWI |
| superfamily: SSF52058 | 624-986 | SSF52058,LRR | CTAIYVNYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKLNGVIPDSFSIGCALQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQFNGNLTCDITTNSWQNLQIIDIASNSFTGVLNAGCFSNWRGMMVAHDYVETGRNHIQYKFFQLSNFYYQDTVTLTIKGMELELVKILRVFTSIDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHLSGEIPSELASLTFLAALILSFNNLFGKIPSTNQFLTFSADSFEGNRGLCGLPLNNSC |
| Gene3D: G3DSA:3.80.10.10 | 632-800 | G3DSA:3.80.10.10 | SSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKLNGVIPDSFSIGCALQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQFNGNLTCDITTNSWQNLQI |
| HMMPfam: PF13855 | 656-710 | LRR_8,Leucine rich repeat | VANNGITGIIPESICNCSYLQVLDFSNNALSGTIPPCLLEYSTKLGVLNLGNNKL |
| HMMPfam: PF13855 | 724-781 | LRR_8,Leucine rich repeat | LQTLDLSANNLQGRLPKSIVNCKLLEVLNVGNNKLVDHFPCMLRNSNSLRVLVLRSNQ |
| HMMPfam: PF13855 | 873-929 | LRR_8,Leucine rich repeat | SIDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHL |
| Gene3D: G3DSA:3.80.10.10 | 874-983 | G3DSA:3.80.10.10 | IDFSSNRFQGVIPNTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLESLDLSTNHLSGEIPSELASLTFLAALILSFNNLFGKIPSTNQFLTFSADSFEGNRGLCGLPLN |
| FPrintScan: PR00019 | 892-905 | LEURICHRPT,Leucine-rich repeat signature | LSSLYVLNLSHNAL |
List of Contributions
There has not been any contribution yet.
