PRGDB00049565 (disease resistance-like protein)

From PRG Wiki
Revision as of 16:55, 7 August 2012 by Cepabot (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459864 (AJ298896)
Gene Class NL
Domain Type NBS, LRR
Gene Species Coffea canephora

Comment?

Coffea canephora partial ORF for disease resistance-like protein, clone NBS CrgaI3.

DNA Sequence

TGGTGTAGGTAAAACAACTTTAGCCAAAAAGGTTTATAATGATAGTTCAGTAATCTGTAACTTCCACATTCGTCTTTGGTGCACTGTTTCTCCAGAATTTAACACGAAAAGCTTGTTAATACAAATTTTGTGCTCTAATGGAAAACAGTCTAGGATGGATGAAGAGCTTAAAAACTTGAATGAACATGAACTGCTTCACAAGCTCTATCAAAGGCTGAAGACGAAGAGGTATCTTGTTGTTTTTGATGATGTCTGGGACATTAAGGTATGGAATGAGCTGAGAATTTCATTCCCCGATGAAAAGAAAGGAAGTAGAATCATCTTCACGAGTCGATCTTCTAATGTGGCTTCACAGGTTGAATTTGGGGGGAAACCTCACAATCTTGTCCCACTCAGTGAGAAAGAAAGTTTTGAATTACTGCTGAAGAAGGTTTTTGGAAATGAAGATTGTCCTCAAGCATTGCATGGATTGGGAATGGAGATTGCCAAAAAGTGCAGGGGATTACCATTCGCAAT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea canephora].

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA

Gene3D: G3DSA:3.40.50.300
1-119 G3DSA:3.40.50.300

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQV

HMMPanther: PTHR11017:SF20
1-171 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA

superfamily: SSF52540
1-171 SSF52540

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox