PRGDB00049839 (leucine-rich repeat family protein)
| leucine-rich repeat family protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 145336375 (NM_103083) |
| Gene Class | Unknown |
| Domain Type | LRR, LRR, Ser-Thr Kinase, Ser-Thr Kinase |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGAACTCTTGTTGCTTCCCTCTCTTCATCTTTGCATTCGTTATCTTTCTCCGGTGTTTAAGTCCCATTGAAGCTGCCACGTGTCATCCTGATGACGAGGCGGGTCTTTTAGCTTTTAAATCGGGTATAACTCAAGATCCTACGGGTATTCTCAGCTCTTGGAAGAAAGGTACTGACTGCTGTTCATGGAAGGGTGTCGGTTGTCTCACCAACCGCGTCACCGGACTCACTATCAACGGACAATCTGATGTTACTGGAAGCTTTCTTTCTGGCACTATCTCGCCGTCATTGGCCAAACTCCAACACCTTGTTGGTATTTACTTCACCAATCTTCGAAACATCACTGGTTCTTTTCCTCAATTCCTTTTCCAATTACCAAATGTAAAACAAGTCTACTTCACGAATAGCCGTCTCTCCGGTCCTCTTCCAGCTAACATTGGTGCGCTAAGCGAGTTAGGAGAACTAAGTCTCGACGGAAACCTGTTTACTGGTCCGATCCCGAGTTCCATTTCCAATTTAACCCGGTTATATCTGCTCAATCTTGGAGATAATCTCTTAACCGGAACTATACCTTTAGGTCTTGCTAATCTCAAGATCTTGTTGTCACTCAACTTTGGCAACAATCGTCTCTCTGAAACCATACCGGATATTTTCAAATCCATGCAGAAGCTCCAATCTCTAACCCTCTCCCGCAACAAATTCTCTGGAAATCTTCCTCCGTCCATTGCATCACTCAAACCAATTCTCAATTACCTCGATCTAAGCCAGAATAATCTCTCTGGGACAATCCCGACCTTTTTATCAAACTTCAAGGTACTAGACTCATTGGATCTTTCTAGAAATAGGTTCTCTGGGGTTGTTCCGAAGAGTTTAGCCAATATGCCTAAACTTTTCCATCTCAATCTCTCCCACAATTTTCTAACTGGTCCACTCCCTGCCATGAAGAACGTTGATGGCCTTGCCACTCTAGATCTTTCATACAACCAATTTCACCTCAAAACGATACCGAAATGGGTGACCTCGTCGCCGTCCATGTACTCGTTGAAGCTGGTAAAATGCGGGATCAATATGAGCTTAGACAATTGGAAGCCAGTGAGACCCAATATTTACTTTTACATCGATCTGTCAGAAAACGAGATCTCAGGGAGTCTAACATGGTTCTTCAACCTAGCGCATAACCTATATGAGTTTCAAGCGTCAGGGAACAAACTTCGATTCGACATGGGGAAGCTGAATTTAAGTGAGAGACTAGAAAGCCTCGATCTATCAAGGAATTTGATATTTGGGAAGGTACCAATGACCGTGGCTAAACTGCAAAAATTGAACTTGAGTCATAACCATCTTTGTGGAAAGCTTCCAGTGACTAAATTCCCGGCCAGCGCGTTTGTCGGTAATGACTGTCTCTGCGGCTCTCCGCTTTCTCCTTGTAAAATTTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| leucine-rich repeat family protein | leucine-rich repeat family protein [Arabidopsis thaliana]. | MNSCCFPLFIFAFVIFLRCLSPIEAATCHPDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSLDNWKPVRPNIYFYIDLSENEISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLESLDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSPCKI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-475 | PTHR24420,FAMILY NOT NAMED | MNSCCFPLFIFAFVIFLRCLSPIEAATCHPDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSLDNWKPVRPNIYFYIDLSENEISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLESLDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP |
| HMMPanther: PTHR24420:SF510 | 1-475 | PTHR24420:SF510 | MNSCCFPLFIFAFVIFLRCLSPIEAATCHPDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSLDNWKPVRPNIYFYIDLSENEISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLESLDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP |
| superfamily: SSF52058 | 26-365 | SSF52058,LRR | ATCHPDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSLDNWKPV |
| Gene3D: G3DSA:3.80.10.10 | 27-323 | G3DSA:3.80.10.10 | TCHPDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATL |
| HMMPfam: PF08263 IPR013210
|
30-68 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
PDDEAGLLAFKSGITQDPTGILSSWKKGTDCCSWKGVGC |
| HMMPfam: PF00560 IPR001611
|
223-245 | LRR_1 Leucine-rich repeat
|
KLQSLTLSRNKFSGNLPPSIASL |
| FPrintScan: PR00019 | 249-262 | LEURICHRPT,Leucine-rich repeat signature | LNYLDLSQNNLSGT |
| HMMPfam: PF13855 | 249-305 | LRR_8,Leucine rich repeat | LNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHN |
| Gene3D: G3DSA:3.80.10.10 | 324-378 | G3DSA:3.80.10.10 | DLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSLDNWKPVRPNIYFYIDLSEN |
| superfamily: SSF52058 | 372-477 | SSF52058,LRR | YIDLSENEISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLESLDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSPCK |
| Gene3D: G3DSA:3.80.10.10 | 379-458 | G3DSA:3.80.10.10 | EISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLESLDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFP |
| FPrintScan: PR00019 | 435-448 | LEURICHRPT,Leucine-rich repeat signature | VAKLQKLNLSHNHL |
| HMMPfam: PF00560 IPR001611
|
437-457 | LRR_1 Leucine-rich repeat
|
KLQKLNLSHNHLCGKLPVTKF |
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