PRGDB00050025 (Os04g0118800)

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Os04g0118800
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 115456919 (NM_001058595)
Gene Class CNL
Domain Type NBS, LRR, Others
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa (japonica cultivar-group) Os04g0118800 (Os04g0118800) mRNA, complete cds.

DNA Sequence

ATGGATGAAGATGGAAACGTGGGGATTGGAGGCAAATACACAGATGGGCTCATTTCTCATTCACTCAGAGTGTCAAAACAGCGATCATGCGTCCACAAGTACGCTGCCGGAGCCAATGTCAGCCTGCAATGCAGGTCATCAAAGCAGGAGCATATGAGCACCACTGAGGTCAGATTTGAGGACTGGATGGCAGAGGCTGTGGTGTTTGGAATCCTATGCAAGATTGGATCCATCTTGAGTTCACATCTAACACAGGCGTTCGTTGCACACTTGGGAAAGGAGGTATCAGTTTTCATTGAAATTGAAAGCAGTATTAAGCAAATCAGAAGTGAGTTTAGGTTGATGCAAGCTTTCCTGCAAGACGGCCAAGAAAAAGAAAGTCATAGCAGGCTGGCAGAAACCTTTCTACACGAAGTTCAGCAGGTATCATTTGAAGTTGAAGACATTCTGGATGAATTTGTCTATTTGTTTGGCCAAAAACAAACCGCATCTCTAAAATCATTGAGGAACTTCTTTCCAAAATCTAAAAGTATGATGCACTGGCAGAGACTAGCAGCAGAGCTCAAAGAAGCGCAGAACCGCCTCCAGAATTTGCGAAATTTGAAGGTTCAGTACAATATTGACTTATCCGAAGAAAGTCCTAGTTCTATCAGGTATGAAGATAGCCAAGTTCACACAATCCAACACATAAAGCATAATAACAAAATTGTTGGTTTTGCAAACGAGCGAGACTGCCTACAAGAGCTGCTGATGACAAACGAGAAATCATGCTCAATAATTTCCATATGGGGCATGGGAGGTTCAGGTAAAACTACTCTTGTCAAAACTGTTTTTGAAAGAAAAGCTATCAAGAATCGTTTTGATTGCCTGATCTGGGTAACTGTGTCACAAACATATGACATTACTGAAATAATGAGAAAGATTATACAATGTGCATTGAAGGAAACTTGCCCAGCTGACCTAGAAAGCATGTGTAGTGAAGGTGTAGCCCTGAAGCTCCAGGGGACTTTGCAGGGAAGGACATACATGATGATCTTGGATGATGTGTGGGATACAAATGTTTGGTTCAACTTGGAACCTTTTCTAGATTTGAACAGCAGAGGAAGCAAGGTTGTAATTACTACTCGCATAAACGATGTTGCTTCTTTGGCAGATGACAAGAACCGCCTTCAACTACGAGGACTAAACGAGGCAGAGTCTTGGGACCTCTTTTGCATGTGGGCATTCAGACATACTGAAGATCAAACATGTCCTCTCAGATTGGAGAGAGTAGCAAGACAGATTGTTGGCAGGTGTGAAGGTCTGCCATTAGCTATAACGGCTGTAGGCAATTTGCTATCATTCAAAAGACTGGATTCGTTTGAGTGGGATAAATTCTATAATCAACTAAATTGGGAATTGCACAATCGATTGGATAACCAAGGACTTAACATGGTGACCCGACTCCTAGGTTTAAGCTACAGGCATCTACCAGCCCACTTGAAGAACTGTTTCCTTTTGTCCAGTATCTTTCCAGAGGACTATATGATACACGGGAAGTGGCTAAGTAGACTGTTAATAGCAGAAGGTTTAGTTGAACCAAGGAAAAATATGACACTGGAGGAGATTGCAACAGAGTACATTGAAAAGCTAGTAGATCGCTGCCTGCTCCAAGTTGTCAGGAGGGATAAGCTTGGAAGAATATGGCAACTCCAGATGCATGACATTGTGAGGGAACTGGCAATTTCAATATCTGAAAAGGAAGGATTCTGCATGATTTATACTAGTAAAGAAGCACATACATCAGTGGTTGGGTGCGAGCCTCGTCGTTTATCAGTTCATGAGAATTATGACAGAGTCCAGCAAATTATAAATGCTCAACGTATTCGTTCTTTCTACCCATATCAATTGGATAGTGATTATTCCGTGATGTCAAATGTGCAATGGGTGTCAACAAGTGCTAGATACTTGAAGACGAACCAAGGTCAAGCAACTTCCTGA


Protein sequences

Name Description Sequence
hypothetical protein Os04g0118800 [Oryza sativa (japonica cultivar-group)].

MDEDGNVGIGGKYTDGLISHSLRVSKQRSCVHKYAAGANVSLQCRSSKQEHMSTTEVRFEDWMAEAVVFGILCKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLHEVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPEDYMIHGKWLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLLQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIYTSKEAHTSVVGCEPRRLSVHENYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLKTNQGQATS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
73-651 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

CKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLHEVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPEDYMIHGKWLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLLQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIYTSKEAHTSVVGCEPRRLSVHENYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLK

HMMPanther: PTHR23155:SF222
73-651 OS12G0246700 PROTEIN,OS12G0246700 PROTEIN

CKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLHEVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPEDYMIHGKWLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLLQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIYTSKEAHTSVVGCEPRRLSVHENYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLK

Coil: coil
181-209 coiled-coil

WQRLAAELKEAQNRLQNLRNLKVQYNIDL

superfamily: SSF52540
217-471 P-loop containing nucleoside triphosphate hydrolases

IRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRL

HMMPfam: PF00931
IPR002182
 245-529 NB-ARC,NBS
NB-ARC

CLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPEDYMIHGKWLSRLLIAEGLVEPRK

Seg: seg
256-269 seg

SCSIISIWGMGGSG

FPrintScan: PR00364
IPR000767
 259-274 DISEASERSIST
Disease resistance protein

IISIWGMGGSGKTTLV

FPrintScan: PR00364
IPR000767
 336-350 DISEASERSIST
Disease resistance protein

TLQGRTYMMILDDVW

FPrintScan: PR00364
IPR000767
 432-446 DISEASERSIST
Disease resistance protein

CEGLPLAITAVGNLL


List of References




List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


Retrieved from "http://prgdb.crg.eu/w/index.php?title=Gene:PRGDB00050025&oldid=10595"
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