PRGDB00050648 (unnamed protein product [Arabidopsis thaliana].)

unnamed protein product [Arabidopsis thaliana].
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	6573284 (AB008018)
Gene Class	CNL
Domain Type	NBS, LRR, Others
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana mRNA expressed from chromosome 1, complete cds.

DNA Sequence

ATGGCTGGAGAACTTGTGTCGTTTGGAATAAAAAAGCTTTGGGACCTACTGAGTCAAGAATGCGAGCAATTTCAGGGAGTTGAAGATCAAGTTACTGGACTAAAACGTGATCTAAACTTGTTAAGCTCTTTTCTAAAAGATGCAGATGCAAAGAAACATACAACTGCGGTGGTGAGAAATGTTGTCGAAGAAATAAAGGAAATTGTTTACGACGCAGAAGATATAATTGAAACATATCTTCTTAAAGAAAAACTTTGGAAAACAAGTGGAATCAAGATGCGTATCAGAAGACATGCTTGCATTATTTCAGATCGTAGGAGAAATGCATTAGATGTTGGAGGCATACGTACGAGGATCTCGGATGTGATCCGAGATATGCAGAGTTTTGGAGTGCAACAAGCTATCGTTGATGGTGGTTATATGCAACCTCAAGGTGATAGACAAAGGGAGATGCGACAAACGTTTTCTAAGGACTACGAAAGCGATTTTGTGGGGTTGGAGGTAAATGTTAAGAAACTGGTTGGATATTTGGTGGACGAAGAAAACGTTCAAGTGGTTTCCATAACCGGGATGGGTGGTCTAGGTAAAACCACACTTGCTAGACAGGTTTTTAACCATGAGGATGTTAAACATCAGTTTGATAGACTCGCATGGGTGTGTGTCTCACAAGAGTTTACTCGGAAGAATGTATGGCAAATGATCTTGCAGAATCTAACCTCTAGAGAAAAGAAAGATGAAATCTTGCAAATGGAAGAAGCTGAACTCCATGATAAACTCTTTCAGCTATTGGAGACATCTAAATCATTAATTGTCTTTGATGACATATGGAAAGACGAAGATTGGGACCTAATAAAGCCAATATTTCCACCCAATAAAGGTTGGAAGGTGCTTCTTACTTCTCAAAATGAGAGTGTCGCGGTACGTGGGGATATAAAATATCTCAACTTTAAACCAGAATGCCTAGCCATTGAGGATAGTTGGACACTTTTCCAAAGAATAGCATTTCCAAAGAAAGATGCATCTGAATCTAAGGTTGACGAGGAAATGGAAGATATGGGTAAGCAAATGTTAAAACATTGTGGAGGGCTACCATTAGCCATCAAAGTGTTAGGAGGTTTGTTAGCTGCAAAGTACACAATGCATGATTGGGAAAGACTATCCGTAAATATCGGATCTGATATCGTGGGAAGAACCAGCAGTAACAACAGTTCAATATACCATGTATTGTCTATGAGCTTTGAGGAGTTGCCTAGTTATTTGAAACATTGTTTCCTCTACCTGGCCCATTTTCCAGAAGATCATAAGATTAACGTGGAGAAATTGTCTTATTGTTGGGCTGCAGAAGGAATATCCACCGCCGAAGATTATCACAATGGAGAGACCATTCAAGATGTTGGACAGAGCTACCTAGAGGAGTTAGTGAGGAGGAATATGATAATTTGGGAAAGAGATGCTACTGCTTCGAGATTTGGAACTTGTCATTTGCATGACATGATGAGAGAAGTTTGTTTGTTTAAAGCCAAGGAAGAAAACTTCCTACAAATTGCTGTAAAAAGTGTAGGTGTAACCAGCTCCTCGACCGGAAACTCTCAATCTCCTTGTAGATCTCGCAGGCTTGTCTACCAATGTCCAACTACATTACATGTTGAGAGAGATATAAACAATCCAAAACTTAGATCTCTCGTGGTTCTCTGGCATGATTTATGGGTAGAAAATTGGAAGCTATTAGGTACAAGCTTTACAAGGTTAAAACTTCTGAAAGTGTTAGATCTCTTCAAAGTCGAACGCGGCCGCGAATTCGCGGCCGCGTTCGACTTTGGAATCTCAAAATTAGTCATTTGA

Protein sequences

Name	Description	Sequence
unnamed protein product [Arabidopsis thaliana].	unnamed protein product [Arabidopsis thaliana].	MAGELVSFGIKKLWDLLSQECEQFQGVEDQVTGLKRDLNLLSSFLKDADAKKHTTAVVRNVVEEIKEIVYDAEDIIETYLLKEKLWKTSGIKMRIRRHACIISDRRRNALDVGGIRTRISDVIRDMQSFGVQQAIVDGGYMQPQGDRQREMRQTFSKDYESDFVGLEVNVKKLVGYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVDEEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPCRSRRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLKVLDLFKVERGREFAAAFDFGISKLVI

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017	11-591	FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	KKLWDLLSQECEQFQGVEDQVTGLKRDLNLLSSFLKDADAKKHTTAVVRNVVEEIKEIVYDAEDIIETYLLKEKLWKTSGIKMRIRRHACIISDRRRNALDVGGIRTRISDVIRDMQSFGVQQAIVDGGYMQPQGDRQREMRQTFSKDYESDFVGLEVNVKKLVGYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVDEEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPCRSRRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLKVLDL
HMMPanther: PTHR11017:SF125	11-591	DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)	KKLWDLLSQECEQFQGVEDQVTGLKRDLNLLSSFLKDADAKKHTTAVVRNVVEEIKEIVYDAEDIIETYLLKEKLWKTSGIKMRIRRHACIISDRRRNALDVGGIRTRISDVIRDMQSFGVQQAIVDGGYMQPQGDRQREMRQTFSKDYESDFVGLEVNVKKLVGYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVDEEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPCRSRRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLKVLDL
superfamily: SSF52540	146-398	P-loop containing nucleoside triphosphate hydrolases	DRQREMRQTFSKDYESDFVGLEVNVKKLVGYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVDEEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRT
HMMPfam: PF00931 IPR002182	168-455	NB-ARC,NBS NB-ARC	VNVKKLVGYLVDEENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFKPECLAIEDSWTLFQRIAFPKKDASESKVDEEMEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAED
Gene3D: G3DSA:3.40.50.300	180-304	no description	EENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSREKKDEILQMEEAELHDKLFQLLETSKSLIVFDDIWKDEDWDLIKPIFPPNKGWKVLLTSQNES
FPrintScan: PR00364 IPR000767	185-200	DISEASERSIST Disease resistance protein	VVSITGMGGLGKTTLA
FPrintScan: PR00364 IPR000767	262-276	DISEASERSIST Disease resistance protein	LLETSKSLIVFDDIW
FPrintScan: PR00364 IPR000767	360-374	DISEASERSIST Disease resistance protein	CGGLPLAIKVLGGLL
Seg: seg	519-532	seg	SVGVTSSSTGNSQS
FPrintScan: PR00364 IPR000767	581-597	DISEASERSIST Disease resistance protein	TRLKLLKVLDLFKVERG
Seg: seg	583-594	seg	LKLLKVLDLFKV

List of References

A Kato, M Suzuki, A Kuwahara, H Ooe, K Higano-Inaba, Y Komeda
Isolation and analysis of cDNA within a 300 kb Arabidopsis thaliana genomic region located around the 100 map unit of chromosome 1.
Gene: 1999, 239(2);309-16
PubMed:10548732 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show