PRGDB00050748 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type LRR, NBS, LRR, TIR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCGACAACACGTTCCCTTGCATACAACTACGATGTGTTCCTCAGCTTCACAGGGCAAGACACACGCCAGGGTTTCACTGGCTATCTCTACAAAGCTCTTTGTGACAGGGGAATCTACACTTTCATTGATGATCAGGAGCTTCGGAGAGGAGACGAAATAAAACCTGCACTTTCCAACGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCATCTTCCTCATTTTGTTTAGATGAACTAGTAACCATCCTTCACTGCAAGAGTCAAGGGCTGTTGGTTATACCGGTCTTTTATAAGGTAGATCCTTCTCATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAACAAGGAGAAGCTGCAGAAATGGAGGATGGCTTTGCATCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGATGGAGATTCATATGAATACGAGTTTATTGGGAGTATTGTTGAGGAGATCTCTAGGAAGTTTAGTCGTGCTTCTTTACATGTTGCGGATTATCCAGTTGGTCTAGAGTCAGAAGTGACAGAGGTAATGAAGCTTTTGGATGTTGGATCCCATGATGTTGTCCATATCATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTGCTCTGGCAGTTCATAATTTCATTGCTCTCCATTTCGATGAATCCTGTTTTCTTCAAAATGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCCTTCTTTCAAAATTACTTGGGGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCAACGAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCGCCAGCAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGAGGTTGAAAGAACCTATGAGGTGAAGGTTTTAAATCAGAGTGCTGCTCTTCAATTGCTTACGTGGAATGCTTTTAAAAGAGAAAAAATTGATCCAAGTTATGAGGATGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTTATAGGTTCCAACTTGTTTGAAAAAACTGTAGCAGAATGGGAATCTGCTATGGAACATTATAAAAGAATTCCCAGTGATGAAATCCAAGAGATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATGAATGGACAGAGGTTGATAATATACTCCGTGACCTTTATGGTAACTGCACGAAGCATCATATTGGGGTGTTGGTTGAAAAATCTCTCGTAAAGGTTAGCTGCTGTGATACTGTTGAAATGCACGACATGATCCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCAGGGAAGTGCAAGAGATTATTGTTACCAAAAGATATCATTCAAGTTTTAAAAGACAACACGGGGACTAGTAAAATTGAAATCATATGTCTGGATTTCTCCATATCTGACAAAGAAGAAACAGTGGAATGGAATGAAAACGCCTTCATGAAGATGAAAAACCTTAAAATACTTATTATTAGAAATTGCAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAGGTTTAAGAGTACTGGAATGGCACAGATATCCTTCAAATTGTTTACCATCTAACTTTGATCCTATCAACCTTGTTATATGCAAGTTACCTGACAGCTCCATTACGTCATTTGAGTTCCATGGCTCATCCAAGAAGCTCGGGCATCTAACAGTTTTAAATTTTGACCGGTGCGAATTTTTAACAAAGATACCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAATTGGTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAACATTGAGTGCTTATGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTAACCTTGGTGGGTGTTCGAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGAAAAACATAACGGTACTTGCTTTGCATGACCTTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCTGTTTTTATGGCTGGATAGTTGTGGAATTGTTCAGTTACGATGTAGCTTAGCCACGATGCCCAAACTGTGTGAATTCTGTATAACGGATAGTTGCAACAGGTGGCAATGGGTAGAATCGGAAGAAGGTGAAGAAAAAGTAGTGGGCTCAATACTATCTTTTGAGGCCACGGACTGCAATCTATGTGATGATTTTTTTTTTATAGGTTCCAAGAGGTTTGCTCATGTAGGATATTTAAATCTACCGGGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAACTGCAATTTTTAACAACTCTTGTGGTGCATGATTGCAAGCATCTTCAGGAAATTAGAGGGCTTCCACCAAACTTAAAGCATTTCGATGCAAGAAACTGTGCATCCTTGACTTCCTCGAGTAAAAGCATGCTTTTAAATCAGGTATTGTCTTTTTTATAA


Protein sequences

Name Description Sequence
R 8 protein R 8 protein [Glycine max].

MAATTRSLAYNYDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADLSGYHFKDGDSYEYEFIGSIVEEISRKFSRASLHVADYPVGLESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFEKTVAEWESAMEHYKRIPSDEIQEILKVSFDALGEEQKNVFLDIACCFKGYEWTEVDNILRDLYGNCTKHHIGVLVEKSLVKVSCCDTVEMHDMIQDMGREIERQRSPEEPGKCKRLLLPKDIIQVLKDNTGTSKIEIICLDFSISDKEETVEWNENAFMKMKNLKILIIRNCKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGSSKKLGHLTVLNFDRCEFLTKIPDVSDLPNLKELSFNWCESLVAVDDSIGFLNKLKTLSAYGCRKLTSFPPLNLTSLETLNLGGCSSLEYFPEILGEMKNITVLALHDLPIKELPFSFQNLIGLLFLWLDSCGIVQLRCSLATMPKLCEFCITDSCNRWQWVESEEGEEKVVGSILSFEATDCNLCDDFFFIGSKRFAHVGYLNLPGNNFTILPEFFKELQFLTTLVVHDCKHLQEIRGLPPNLKHFDARNCASLTSSSKSMLLNQVLSFL

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
 1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSLAYNYDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADLSGY

ProfileScan: PS50104
IPR000157
 10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

YNYDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADL

Gene3D: G3DSA:3.40.50.10140
10-140 G3DSA:3.40.50.10140

YNYDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKW

HMMSmart: SM00255
IPR000157
 11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

NYDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADL

HMMPfam: PF01582
IPR000157
 14-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALH

HMMPanther: PTHR11017
38-891 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADLSGYHFKDGDSYEYEFIGSIVEEISRKFSRASLHVADYPVGLESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFEKTVAEWESAMEHYKRIPSDEIQEILKVSFDALGEEQKNVFLDIACCFKGYEWTEVDNILRDLYGNCTKHHIGVLVEKSLVKVSCCDTVEMHDMIQDMGREIERQRSPEEPGKCKRLLLPKDIIQVLKDNTGTSKIEIICLDFSISDKEETVEWNENAFMKMKNLKILIIRNCKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGSSKKLGHLTVLNFDRCEFLTKIPDVSDLPNLKELSFNWCESLVAVDDSIGFLNKLKTLSAYGCRKLTSFPPLNLTSLETLNLGGCSSLEYFPEILGEMKNITVLALHDLPIKELPFSFQNLIGLLFLWLDSCGIVQLRCSLATMPKLCEFCITDSCNRWQWVESEEGEEKVVGSILSFEATDCNLCDDFFFIGSKRFAHVGYLNLPGNNFTILPEFFKELQFLTTLVVHDCKHLQEIRGLPPNLKHFDARNCASLTSSSKSMLLNQVLSF

HMMPanther: PTHR11017:SF20
38-891 PTHR11017:SF20,SUBFAMILY NOT NAMED

RGIYTFIDDQELRRGDEIKPALSNAIQESRIAITVLSQNYASSSFCLDELVTILHCKSQGLLVIPVFYKVDPSHVRHQKGSYGEAMAKHQKRFKANKEKLQKWRMALHQVADLSGYHFKDGDSYEYEFIGSIVEEISRKFSRASLHVADYPVGLESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFEKTVAEWESAMEHYKRIPSDEIQEILKVSFDALGEEQKNVFLDIACCFKGYEWTEVDNILRDLYGNCTKHHIGVLVEKSLVKVSCCDTVEMHDMIQDMGREIERQRSPEEPGKCKRLLLPKDIIQVLKDNTGTSKIEIICLDFSISDKEETVEWNENAFMKMKNLKILIIRNCKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGSSKKLGHLTVLNFDRCEFLTKIPDVSDLPNLKELSFNWCESLVAVDDSIGFLNKLKTLSAYGCRKLTSFPPLNLTSLETLNLGGCSSLEYFPEILGEMKNITVLALHDLPIKELPFSFQNLIGLLFLWLDSCGIVQLRCSLATMPKLCEFCITDSCNRWQWVESEEGEEKVVGSILSFEATDCNLCDDFFFIGSKRFAHVGYLNLPGNNFTILPEFFKELQFLTTLVVHDCKHLQEIRGLPPNLKHFDARNCASLTSSSKSMLLNQVLSF

superfamily: SSF52540
171-418 SSF52540

EEISRKFSRASLHVADYPVGLESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFEKTVAEWESAMEHYKRIPSDEI

Gene3D: G3DSA:3.40.50.300
188-334 G3DSA:3.40.50.300

PVGLESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLK

HMMPfam: PF00931
IPR002182
 192-451 NB-ARC,NBS
NB-ARC

ESEVTEVMKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFEKTVAEWESAMEHYKRIPSDEIQEILKVSFDALGEEQKNVFLDIACCFKGYEWTE

HMMSmart: SM00382
IPR003593
 209-347 AAA,NBS
AAA+ ATPase domain

VVHIIGIHGMGGLGKTTLALAVHNFIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVL

FPrintScan: PR00364
IPR000767
 212-227 DISEASERSIST
Disease resistance protein

IIGIHGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
 288-302 DISEASERSIST
Disease resistance protein

RLQRKKVLLILDDVD

FPrintScan: PR00364
IPR000767
 381-395 DISEASERSIST
Disease resistance protein

ASGLPLALEVIGSNL

superfamily: SSF46785
416-524 SSF46785

DEIQEILKVSFDALGEEQKNVFLDIACCFKGYEWTEVDNILRDLYGNCTKHHIGVLVEKSLVKVSCCDTVEMHDMIQDMGREIERQRSPEEPGKCKRLLLPKDIIQVLK

superfamily: SSF52058
498-892 SSF52058,LRR

IERQRSPEEPGKCKRLLLPKDIIQVLKDNTGTSKIEIICLDFSISDKEETVEWNENAFMKMKNLKILIIRNCKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGSSKKLGHLTVLNFDRCEFLTKIPDVSDLPNLKELSFNWCESLVAVDDSIGFLNKLKTLSAYGCRKLTSFPPLNLTSLETLNLGGCSSLEYFPEILGEMKNITVLALHDLPIKELPFSFQNLIGLLFLWLDSCGIVQLRCSLATMPKLCEFCITDSCNRWQWVESEEGEEKVVGSILSFEATDCNLCDDFFFIGSKRFAHVGYLNLPGNNFTILPEFFKELQFLTTLVVHDCKHLQEIRGLPPNLKHFDARNCASLTSSSKSMLLNQVLSFL

Gene3D: G3DSA:3.80.10.10
553-680 G3DSA:3.80.10.10

NAFMKMKNLKILIIRNCKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGSSKKLGHLTVLNFDRCEFLTKIPDVSDLPNLKELSFNWCESLVAVDDSIGFLNKLKTLS

Gene3D: G3DSA:3.80.10.10
681-768 G3DSA:3.80.10.10

AYGCRKLTSFPPLNLTSLETLNLGGCSSLEYFPEILGEMKNITVLALHDLPIKELPFSFQNLIGLLFLWLDSCGIVQLRCSLATMPKL

FPrintScan: PR00364
IPR000767
 693-709 DISEASERSIST
Disease resistance protein

LNLTSLETLNLGGCSSL

Gene3D: G3DSA:3.80.10.10
821-879 G3DSA:3.80.10.10

VGYLNLPGNNFTILPEFFKELQFLTTLVVHDCKHLQEIRGLPPNLKHFDARNCASLTSS


List of References

Michelle A Graham, Laura Fredrick Marek, Randy C Shoemaker
Organization, expression and evolution of a disease resistance gene cluster in soybean.
Genetics: 2002, 162(4);1961-77
PubMed:12524363 WorldCat.org (P p)





List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Retrieved from "http://prgdb.crg.eu/w/index.php?title=Gene:PRGDB00050748&oldid=11315"
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