PRGDB00050757 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class T
Domain Type TIR, LRR
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCAACAACACGTTCACGTGCATCCATCTACGATGTGTTCCTCAACTTCAGAGGGGAAGACACACGCTATGGTTTCACCGGCAATCTCTACAGGGCTCTTTCTGACAAGGGAATTCGTACCTTCTTTGACGAAGAGAAGCTTCACAGCGGAGAGGAAATAACACCTGCACTTTTGAAGGCAATTAAAGATTCCAGAATTGCCATCACTGTGCTCTCTGAAGACTTTGCTTCTTCCTCATTTTGCTTAGATGAACTTACATCCATTGTTCACTGCGCCCAGTATAATGGGATGATGATTATACCAGTGTTTTATAAGGTGTATCCTTCTGATGTCAGACACCAGAAGGGTACTTATGGAGAAGCATTGGCTAAGCATAAGATAAGATTTCCAGAAAAGTTCCAGAATTGGGAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTTTCATTTCAAATACAGAGATGAATATGAGTACAAGTTTATTGAGAGAATTGTTGCGTCGGTCTCTGAGAAGATTAATCCTGCTAGAATACATGTTGCCGATCTGCCTGTTGAACAAGAGTCCAAAGTGCAAGATACCCATCAAGAGCAAGAATACAGAGAGGCTTTCAAGGTGTTTGACAAGGATCAAAATGGCTACATTTCAGCAAGTGAGTTGAGGCAAGTTCTGATCAAACTGGGTCAAAACACAACTGTTGGAGAGGTGGAGGAGATGATTGCAACTGCAGATTTCGATGGTGATGGTCAAATTAGCTATGATGAATTTGTTAAGACTATGAAAATTTAA


Protein sequences

Name Description Sequence
R 6 protein R 6 protein [Glycine max].

MAATTRSRASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGFHFKYRDEYEYKFIERIVASVSEKINPARIHVADLPVEQESKVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTMKI

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
 1-151 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSRASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGF

Gene3D: G3DSA:3.40.50.10140
9-145 G3DSA:3.40.50.10140

ASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQV

ProfileScan: PS50104
IPR000157
 10-148 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL

HMMSmart: SM00255
IPR000157
 11-148 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL

HMMPfam: PF01582
IPR000157
 14-142 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMAL

superfamily: SSF47473
178-262 SSF47473

ARIHVADLPVEQESKVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM

HMMPanther: PTHR23050
192-262 PTHR23050,CALCIUM BINDING PROTEIN

KVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM

HMMPanther: PTHR23050:SF20
192-262 PTHR23050:SF20,CALMODULIN

KVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM

Gene3D: G3DSA:1.10.238.10
IPR011992
 197-263 EF-Hand_type
EF-hand-like domain

HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTMK

ProfileScan: PS50222
IPR018249
 197-232 EF_HAND_2
EF-HAND 2

HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQN

HMMSmart: SM00054
IPR002048
 201-229 EFh
Calcium-binding EF-hand

EYREAFKVFDKDQNGYISASELRQVLIKL

HMMPfam: PF13499
202-260 EF_hand_5,EF-hand domain pair

YREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVK

PatternScan: PS00018
IPR018247
 210-222 EF_HAND_1
EF-Hand 1, calcium-binding site

DKDQNGYISASEL

ProfileScan: PS50222
IPR018249
 233-264 EF_HAND_2
EF-HAND 2

TTVGEVEEMIATADFDGDGQISYDEFVKTMKI

HMMSmart: SM00054
IPR002048
 237-264 EFh
Calcium-binding EF-hand

EVEEMIATADFDGDGQISYDEFVKTMKI

PatternScan: PS00018
IPR018247
 246-258 EF_HAND_1
EF-Hand 1, calcium-binding site

DFDGDGQISYDEF


List of References

Michelle A Graham, Laura Fredrick Marek, Randy C Shoemaker
Organization, expression and evolution of a disease resistance gene cluster in soybean.
Genetics: 2002, 162(4);1961-77
PubMed:12524363 WorldCat.org (P p)





List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


Retrieved from "http://prgdb.crg.eu/w/index.php?title=Gene:PRGDB00050757&oldid=11324"
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