PRGDB00050757 (R 11)
| R 11 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 27764534 (AF541963) |
| Gene Class | T |
| Domain Type | TIR, LRR |
| Gene Species | Glycine max |
DNA Sequence
ATGGCTGCAACAACACGTTCACGTGCATCCATCTACGATGTGTTCCTCAACTTCAGAGGGGAAGACACACGCTATGGTTTCACCGGCAATCTCTACAGGGCTCTTTCTGACAAGGGAATTCGTACCTTCTTTGACGAAGAGAAGCTTCACAGCGGAGAGGAAATAACACCTGCACTTTTGAAGGCAATTAAAGATTCCAGAATTGCCATCACTGTGCTCTCTGAAGACTTTGCTTCTTCCTCATTTTGCTTAGATGAACTTACATCCATTGTTCACTGCGCCCAGTATAATGGGATGATGATTATACCAGTGTTTTATAAGGTGTATCCTTCTGATGTCAGACACCAGAAGGGTACTTATGGAGAAGCATTGGCTAAGCATAAGATAAGATTTCCAGAAAAGTTCCAGAATTGGGAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTTTCATTTCAAATACAGAGATGAATATGAGTACAAGTTTATTGAGAGAATTGTTGCGTCGGTCTCTGAGAAGATTAATCCTGCTAGAATACATGTTGCCGATCTGCCTGTTGAACAAGAGTCCAAAGTGCAAGATACCCATCAAGAGCAAGAATACAGAGAGGCTTTCAAGGTGTTTGACAAGGATCAAAATGGCTACATTTCAGCAAGTGAGTTGAGGCAAGTTCTGATCAAACTGGGTCAAAACACAACTGTTGGAGAGGTGGAGGAGATGATTGCAACTGCAGATTTCGATGGTGATGGTCAAATTAGCTATGATGAATTTGTTAAGACTATGAAAATTTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| R 6 protein | R 6 protein [Glycine max]. | MAATTRSRASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGFHFKYRDEYEYKFIERIVASVSEKINPARIHVADLPVEQESKVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTMKI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-151 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
MAATTRSRASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGF |
| Gene3D: G3DSA:3.40.50.10140 | 9-145 | G3DSA:3.40.50.10140 | ASIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQV |
| ProfileScan: PS50104 IPR000157
|
10-148 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SIYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL |
| HMMSmart: SM00255 IPR000157
|
11-148 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
IYDVFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL |
| HMMPfam: PF01582 IPR000157
|
14-142 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLNFRGEDTRYGFTGNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMAL |
| superfamily: SSF47473 | 178-262 | SSF47473 | ARIHVADLPVEQESKVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM |
| HMMPanther: PTHR23050 | 192-262 | PTHR23050,CALCIUM BINDING PROTEIN | KVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM |
| HMMPanther: PTHR23050:SF20 | 192-262 | PTHR23050:SF20,CALMODULIN | KVQDTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTM |
| Gene3D: G3DSA:1.10.238.10 IPR011992
|
197-263 | EF-Hand_type EF-hand-like domain
|
HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVKTMK |
| ProfileScan: PS50222 IPR018249
|
197-232 | EF_HAND_2 EF-HAND 2
|
HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGQN |
| HMMSmart: SM00054 IPR002048
|
201-229 | EFh Calcium-binding EF-hand
|
EYREAFKVFDKDQNGYISASELRQVLIKL |
| HMMPfam: PF13499 | 202-260 | EF_hand_5,EF-hand domain pair | YREAFKVFDKDQNGYISASELRQVLIKLGQNTTVGEVEEMIATADFDGDGQISYDEFVK |
| PatternScan: PS00018 IPR018247
|
210-222 | EF_HAND_1 EF-Hand 1, calcium-binding site
|
DKDQNGYISASEL |
| ProfileScan: PS50222 IPR018249
|
233-264 | EF_HAND_2 EF-HAND 2
|
TTVGEVEEMIATADFDGDGQISYDEFVKTMKI |
| HMMSmart: SM00054 IPR002048
|
237-264 | EFh Calcium-binding EF-hand
|
EVEEMIATADFDGDGQISYDEFVKTMKI |
| PatternScan: PS00018 IPR018247
|
246-258 | EF_HAND_1 EF-Hand 1, calcium-binding site
|
DFDGDGQISYDEF |
List of References
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