PRGDB00050868 (AT3g05370/T12H1_34)
| AT3g05370/T12H1_34 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 19699331 (AY090373) |
| Gene Class | Unknown |
| Domain Type | LRR, LRR, Ser-Thr Kinase, Ser-Thr Kinase |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGATGATTCCAAGCCAATCTTGCTTCTGTTTTTTCTTCATGGTTTCATTCTTTCTACACACTCTTGCTTCTCCTACGCTTCGCCATTGCCGCCATGACCAAAGGAATGCTCTTCTGGAGTTCAAACACGAGTTTCCGCGGGTAAATGAATCCAACCAAATTCCTTATGATGTATCGTTAAGTTCATGGAACAAGAGCATTGATTGTTGTTCTTGGGAGGGTGTCACGTGCGATGCTATATCTAGCGAGGTGATTTCACTTAACCTTAGTCATGTTCCTCTTAATAACTCATTGAAACCAAATAGTGGTCTTTTCAAACTTCAACATCTTCATAACTTAACCCTTAGTAATTGTAGTCTCTATGGAGATATTCCTTCTTCATTAGGAAACCTTTTTCGTCTCACACTTCTTGACCTTTCGTATAATTATTTAGTTGGTCAAGTTCCACCTTCTATAGGAAACCTTTCTCGACTCACAATTCTTGACCTTTGGGATAATAAGTTAGTAGGTCAACTTCCAGCTTCAATAGGAAACCTAACCCAACTAGAATACTTGATCTTTTCACACAACAAATTCAGTGGCAATATTCCTGTTACATTCTCCAATTTAACAAAACTGCTCGTTGTCAACCTCTATAATAATTCCTTCGAATCCATGCTCCCACTTGACATGAGTGGATTCCAAAACTTGGACTATTTTAATGTTGGTGAAAACTCATTTTCCGGGACTTTGCCTAAATCTTTGTTCACAATTCCTTCATTACGTTGGGCTAATTTAGAGGGAAACATGTTCAAGGGACCTATAGAGTTTAGGAATATGTATTCACCATCTACTAGGCTTCAATATCTATTTCTTTCTCAAAACAAATTTGATGGCCCAATCCCTGATACTCTATCCCAATATCTCAATCTCATAGAGTTAGATCTTAGTTTCAACAATCTAACTGGATCTTTCCCTACGTTCTTGTTCACAATTCCCACGTTAGAAAGGGTTAACTTAGAGGGAAACCATCTCAAGGGACCTGTAGAGTTTGGAAACATGTCTTCATCGTCTAGTCTCAAGTTTCTAAACTTTGCTCAAAACGAATTCAATGGCTCGATCCCCGAATCTGTATCTCAGTATCTCAATCTTGAAGAGCTACATCTTAGTTTCAACAATTTCATTGGTACAATCCCAAGATCTATATCAAAGTTAGCCAAACTTGAATATTTTTGTCTTGAAGACAATAATATGGTAGGTGAAGTACCAAGTTGGCTATGGAGATTGACAATGGTGGCACTTTCTAACAATTCTTTCAACAGTTTTGGAGAATCATCAGAAGGTCTTGATGAAACACAAGTTCAGTGGTTGGATCTTAGTTCAAATTCATTTCAAGGACCATTTCCTCATTGGATATGCAAGCTTAGATCGTTGGAGATCTTAATTATGTCCGATAATCGCTTCAACGGCTCAATTCCTCCATGTTTAAGCAGCTTCATGGTTTCTCTTACAGATTTAATTCTACGTAACAACAGTTTGAGTGGACCTCTTCCTGATATATTTGTCAATGCGACAAAGCTACTATCACTTGACGTTAGTCGCAACAAGTTGGATGGAGTACTACCAAAATCTTTGATCCATTGCAAAGCTATGCAACTTTTGAATGTGAGAAGCAACAAAATCAAGGACAAGTTTCCTTCTTGGTTAGGATCTCTACCGTCATTACATGTCCTCATCCTACGATCAAATGAGTTTTATGGGACGTTGTATCAACCCCATGCATCCATTGGGTTTCAAAGTTTAAGAGTCATTGATGTCTCACACAATGACTTGATTGGGACGTTACCGTCATTCTATTTTTCTAGTTGGCGTGAAATGAGCAGATTAACAGGAGAAGATGGCGACTTTAGACTTTCTGAGGCTCCATACATGGGAAAAGTTTTGAATGCTACTGCATTCTTTGTTGATTCAATGGAAATCGTGAACAAAGGAGTAGAGACGGAGTTTAAGCGGATCAACGAAGAAAACAAAGTCATAAACTTTTCTGGAAACAGATTTTCTGGAAATATACCTGAATCCATTGGATTGTTGAAAGAGTTACGTCATCTCAACTTGTCAAGTAATGCATTCACAGGAAATATCCCACAATCATTGGCAAATTTGATGAAGCTTGAGGCGTTAGACTTATCTCTGAATCAGTTGTCTGGTCAAATTCCTCAAGGACTTGGTAGTCTCTCGTTTATGTCAACAATGAACTTCTCTTACAACTTTCTTGAAGGTCCAGTGCCTAAAAGCACACAGTTCCAAGGTCAAAACTGTTCTGCATTCATGGAAAACCCCAAGCTCAATGGTCTCGAGGAAATATGTAGAGAAACTGATCGTGTCCCGAATCCAAAACCACAAGAATCAAAAGATTTGTCTGAGCCGGAAGAACATGTGATTAACTGGATAGCCGCGGGAATAGCTTATGGTCCTGGTGTCGTCTGTGGATTGGTAATTGGACATATATTCCTTTCACACAAACACGAGTGTTGGTTCATGGAAAAGTTTCGTCGAAAAAAGCCCAAAGTAGTCACCAGAATTGCTCGTCCCTCTAAGCATTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| AT3g05370/T12H1_34 | AT3g05370/T12H1_34 [Arabidopsis thaliana]. | MMIPSQSCFCFFFMVSFFLHTLASPTLRHCRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMENPKLNGLEEICRETDRVPNPKPQESKDLSEPEEHVINWIAAGIAYGPGVVCGLVIGHIFLSHKHECWFMEKFRRKKPKVVTRIARPSKH |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-840 | PTHR24420,FAMILY NOT NAMED | MMIPSQSCFCFFFMVSFFLHTLASPTLRHCRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMENPKLNGLEEICRETDRVPNPKPQESKDLSEPEEHVINWIAAGIAYGPGVVCGLVIGHIFLSHKHECWFM |
| HMMPanther: PTHR24420:SF913 | 1-840 | PTHR24420:SF913 | MMIPSQSCFCFFFMVSFFLHTLASPTLRHCRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMENPKLNGLEEICRETDRVPNPKPQESKDLSEPEEHVINWIAAGIAYGPGVVCGLVIGHIFLSHKHECWFM |
| superfamily: SSF52058 | 28-348 | SSF52058,LRR | RHCRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMS |
| Gene3D: G3DSA:3.80.10.10 | 30-273 | G3DSA:3.80.10.10 | CRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNM |
| HMMPfam: PF08263 IPR013210
|
32-78 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
HDQRNALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCD |
| HMMPfam: PF00560 IPR001611
|
133-155 | LRR_1 Leucine-rich repeat
|
RLTLLDLSYNYLVGQVPPSIGNL |
| HMMPfam: PF13855 | 156-215 | LRR_8,Leucine rich repeat | SRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNS |
| Gene3D: G3DSA:3.80.10.10 | 278-427 | G3DSA:3.80.10.10 | TRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPSWLWRLTMVAL |
| superfamily: SSF52047 | 298-503 | SSF52047,LRR | LSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRN |
| HMMPfam: PF00560 IPR001611
|
303-320 | LRR_1 Leucine-rich repeat
|
NLIELDLSFNNLTGSFPT |
| FPrintScan: PR00019 | 304-317 | LEURICHRPT,Leucine-rich repeat signature | LIELDLSFNNLTGS |
| HMMPfam: PF00560 IPR001611
|
376-398 | LRR_1 Leucine-rich repeat
|
NLEELHLSFNNFIGTIPRSISKL |
| Gene3D: G3DSA:3.80.10.10 | 428-620 | G3DSA:3.80.10.10 | SNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMS |
| superfamily: SSF52058 | 493-784 | SSF52058,LRR | MVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMENPKLNGLEEICRE |
| HMMPfam: PF13855 | 495-554 | LRR_8,Leucine rich repeat | SLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKI |
| Gene3D: G3DSA:3.80.10.10 | 671-773 | G3DSA:3.80.10.10 | VINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQGQNCSAFMENP |
| HMMPfam: PF00560 IPR001611
|
693-714 | LRR_1 Leucine-rich repeat
|
LRHLNLSSNAFTGNIPQSLANL |
| FPrintScan: PR00019 | 714-727 | LEURICHRPT,Leucine-rich repeat signature | LMKLEALDLSLNQL |
List of Contributions
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