PRGDB00050964 (RTM1)
RTM1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 30679421 (NM_100456) |
Gene Class | Other |
Domain Type | |
Chromosome | 1 |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGAAGATAGGACCTGTAGGGAAGCATGATGCTAGAAGCACTACAATTGTAAACTGGGACGAAGGATCTCACGATGGCTTCATCTCTCAGATTTTTCTATCTCATGGCGTCGCTGGAATTATGTCTATCCAATTCCAGTTCGTGATGGACGGAAAACTCGTTTTATCCGATCGTCACGGTCCATTTTCCGGCAACATGTTTGACGTTATAGAGCTCAACTATCCGCATGAGTACATAACTGGAATCAGTGGAGAGTATTACAAGTATGAAGCCAACAATCCTCACATGAGGTCTCTCAAATTCAATACCAACACTAGCGAGTACGGTCCTTTTGGCACCTCCGGTTCGAGCAACGACAAATTTGCTTTTAAACTCGGGAAATCTCCTCAGTTCGGCGGTTTCCATGGGACTTATGATGCCTCGGGACTACAGTACATTGGTGTTTATCTCCGCCCAAAAACAGTTCTACCCAAAATAGATACGGGCAATGCAGAGGAAACAGAGTCAAAAATTGTACTGGGCTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
RTM1 (RESTRICTED TEV MOVEMENT 1) | RTM1 (RESTRICTED TEV MOVEMENT 1) [Arabidopsis thaliana]. | MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRPKTVLPKIDTGNAEETESKIVLG |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF51101 IPR001229
|
1-152 | Mannose-bd_lectin Mannose-binding lectin
|
MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP |
Gene3D: G3DSA:2.100.10.30 IPR001229
|
2-152 | Mannose-bd_lectin Mannose-binding lectin
|
KIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP |
HMMSmart: SM00915 IPR001229
|
16-152 | Jacalin Mannose-binding lectin
|
IVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP |
HMMPfam: PF01419 IPR001229
|
18-152 | Jacalin Mannose-binding lectin
|
NWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Synergistic Disease Syndromes | Tobacco etch virus |
List of Contributions
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