PRGDB00050964 (RTM1)

RTM1
Gene Type	Reference_R-Genes,_manually_curated
GenBank	30679421 (NM_100456)
Gene Class	Other
Domain Type
Chromosome	1
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana RTM1 (RESTRICTED TEV MOVEMENT 1) (RTM1) mRNA, complete cds.

DNA Sequence

ATGAAGATAGGACCTGTAGGGAAGCATGATGCTAGAAGCACTACAATTGTAAACTGGGACGAAGGATCTCACGATGGCTTCATCTCTCAGATTTTTCTATCTCATGGCGTCGCTGGAATTATGTCTATCCAATTCCAGTTCGTGATGGACGGAAAACTCGTTTTATCCGATCGTCACGGTCCATTTTCCGGCAACATGTTTGACGTTATAGAGCTCAACTATCCGCATGAGTACATAACTGGAATCAGTGGAGAGTATTACAAGTATGAAGCCAACAATCCTCACATGAGGTCTCTCAAATTCAATACCAACACTAGCGAGTACGGTCCTTTTGGCACCTCCGGTTCGAGCAACGACAAATTTGCTTTTAAACTCGGGAAATCTCCTCAGTTCGGCGGTTTCCATGGGACTTATGATGCCTCGGGACTACAGTACATTGGTGTTTATCTCCGCCCAAAAACAGTTCTACCCAAAATAGATACGGGCAATGCAGAGGAAACAGAGTCAAAAATTGTACTGGGCTGA

Protein sequences

Name	Description	Sequence
RTM1 (RESTRICTED TEV MOVEMENT 1)	RTM1 (RESTRICTED TEV MOVEMENT 1) [Arabidopsis thaliana].	MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRPKTVLPKIDTGNAEETESKIVLG

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF51101 IPR001229	1-152	Mannose-bd_lectin Mannose-binding lectin	MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP
Gene3D: G3DSA:2.100.10.30 IPR001229	2-152	Mannose-bd_lectin Mannose-binding lectin	KIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP
HMMSmart: SM00915 IPR001229	16-152	Jacalin Mannose-binding lectin	IVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP
HMMPfam: PF01419 IPR001229	18-152	Jacalin Mannose-binding lectin	NWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVIELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDASGLQYIGVYLRP

Diseases

Disease	Pathogen	Avirulence gene
Synergistic Disease Syndromes	Tobacco etch virus

List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show