PRGDB00061442 (Pi9)

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Pi9
Gene Type Reference_R-Genes,_manually_curated
GenBank 83571777 (DQ285630)
Gene Class CNL
Domain Type NBS, LRR, Others
Chromosome 8
Gene Species Oryza sativa Indica Group

Comment?

Oryza sativa (indica cultivar-group) putative nitrate-induced NOI protein (75-1-127BAC12.1), putative NBS-LRR disease resistance protein (Nbs1-Pi9), putative NBS-LRR disease resistance protein (Nbs3-Pi9), and NBS-LRR disease resistance protein (Pi9) genes

DNA Sequence

ATGGCGGAGACGGTGCTGAGCATGGCGAGGTCGCTGGTGGGCAGTGCCATCAGCAAGGCCGCCTCTGCCGCTGCCAATGAGACGAGCCTCCTGCTCGGCGTCGAGAAGGACATCTGGTATATCAAAGATGAGCTAAAAACAATGCAGGCATTCCTTAGAGCTGCTGAAGTTATGAAAAAGAAAGATGAACTATTAAAGGTTTGGGCAGAGCAAATACGTGACCTGTCGTATGACATTGAAGATTCCCTTGATGAATTTAAAGTCCATATTGAAAGCCAAACCCTATTTCGTCAGTTGGTGAAACTTAGAGAGCGCCACCGGATCGCTATCCGTATCCACAACCTCAAATCAAGAGTTGAAGAAGTGAGTAGCAGGAACACACGCTACAATTTAGTCGAGCCTATTTCCTCCGGCACAGAGGATGACATGGATTCCTATGCAGAAGACATTCGCAATCAATCAGCTCGAAATGTGGATGAAGCTGAGCTTGTTGGGTTTTCTGACTCCAAGAAAAGGCTGCTTGAAATGATCGATACCAATGCTAATGATGGTCCGGCCAAGGTAATCTGTGTTGTTGGGATGGGTGGTTTAGGCAAGACAGCTCTTTCGAGGAAGATCTTTGAAAGCGAAGAAGACATTAGGAAGAACTTCCCTTGCATTGCTTGGATTACAGTGTCACAATCATTTCACAGGATTGAGCTACTTAAAGATATGATACGCCAACTTCTTGGCCCCAGTTCTCTGGATCAACTCTTGCAAGAATTGCAAGGGAAGGTGGTGGTGCAAGTACATCATCTTTCTGAGTACCTGATAGAAGAGCTCAAGGAGAAGAGGTACTTTGTTATTCTAGATGATCTATGGATTTTACATGATTGGAATTGGATAAATGAAATTGCATTTCCTAAGAACAATAAGAAGGGCAGTCGAATAGTAATAACCACTCGGAATGTTGATCTAGCGGAGAAGTGTGCCACAGCCTCACTGGTGTACCACCTTGATTTCTTGCAGATGAACGATGCCATAACATTGCTACTGAGAAAAACAAATAAAAATCATGAAGACATGGAATCAAATAAAAATATGCAAAAGATGGTTGAACGAATTGTAAATAAATGTGGTCGTCTACCATTAGCAATACTTACAATAGGAGCTGTGCTTGCAACTAAACATGTGTCAGAATGGGAGAAATTCTATGAACAACTTCCTTCAGAACTAGAAATAAACCCAAGCCTGGAAGCTTTGAGGAGAATGGTGACCCTAGGTTACAACCACCTACCATCCCATCTGAAACCATGCTTTTTGTATCTAAGTATCTTTCCTGAGGATTTTGAAATCAAAAGGAATCGTCTAGTAGGTAGATGGATAGCAGAAGGGTTTGTTAGACCAAAGGTTGGGATGACGACTAAGGATGTCGGAGAAAGTTACTTTAATGAGCTAATCAACCGAAGTATGATTCAACGATCAAGAGTGGGCATAGCAGGAAAAATTAAGACTTGTCGAATCCATGATATCATCCGTGATATCACAGTTTCAATCTCGAGACAGGAAAATTTTGTATTATTACCAATGGGAGATGGCTCTGATTTAGTTCAGGAAAACACTCGCCACATAGCATTCCATGGGAGTATGTCCTGCAAAACAGGATTGGATTGGAGCATTATTCGATCATTAGCTATTTTTGGTGACAGACCCAAGAGTCTAGCACATGCAGTTTGTCTAGATCAATTGAGGATGTTACGGGTCTTGGATCTTGAAGATGTGACATTCTTAATCACTCAAAAAGATTTCGACCGTATTGCATTGTTGTGCCACTTGAAATACTTGAGTATTGGATATTCGTCATCCATATATTCACTTCCCAGATCCATTGGTAAACTACAGGGCCTACAAACTTTGAACATGCTGAGAACATACATTGCAGCACTACCAAGTGAGATCAGTAAACTCCAATGTCTGCATACTCTTCGTTGTAGTAGAAAGTTTGTTTATGACAACTTTAGTCTAAACCACCCAATGAAGTGCATAACTAACACAATATGCCTGCCTAAAGTATTCACACCTTTAGTTAGTCGCGATGATCGTGCAAAACAAATTGCTGAATTGCACATGGCCACCAAAAGTTGCTGGTCTGAATCATTCGGTGTGAAGGTACCCAAAGGAATAGGTAAGTTGCGAGACTTGCAGGTTCTAGAGTATGTAGATATCAGGCGGACCAGTAGTAGAGCAATCAAAGAGCTGGGGCACTTAAGCAAGTTGAGGAAATTAGGTGTGATAACAAAAGGCTCGACAAAGGAAAAATGTAAGATACTTTATGCAGCCATTGAGAAGCTCTCTTCCCTCCAATCTCTCTATGTGAATGCTGCGTTATTATCAGATATTGAAACACTTGAGTGCCTAGATTCTATTTCATCTCCTCCTCCCCTACTGAGGACACTCGGGTTGAATGGAAGTCTTGAAGAGATGCCTAACTGGATTGAGCAGCTCACTCACCTGAAGAAGATCTACTTATTGAGGAGCAAACTAAAGGAAGGTAAAACCATGCTGATACTTGGGGCATTGCCCAACCTCATGGTCCTTTATCTTTATTGGAATGCTTACCTTGGGGAGAAGCTAGTATTCAAAACGGGAGCATTCCCAAATCTTAGAACACTTCGTATTTACGAATTGGATCAGCTAAGAGAGATGAGATTTGAGGATGGCAGCTCACCCCTGTTGGAAAAGATAGAAATCTCTTGCTGCAGGTTGGAATCAGGGATTATTGGTATCATTCACCTTCCAAGGCTCAAGGAGATTTCACTTGAATACAAAAGTAAAGTGGCTAGGCTTGGTCAGCTGGAGGGAGAAGTGAACACACACCCAAATCGCCCCGTGCTGCGAATGGACAGTGACCGAAGGGATCACGACCTGGGGGCTGAAGCCGAAGGATCTTCTATAGAAGTGCAAACAGCAGATCCTGTTCCTGATGCCGAAGGATCAGTCACTGTAGCAGTGGAAGCAACGGATCCCCTTCCCGAGCAGGAGGGAGAGAGCTCGCAGTCGCAGGTGATCACGTTGACGACGAACGATAGCGAAGAGATAGGCACAGCTCAAGCTGGCTGA


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza sativa Indica Group].

MAETVLSMARSLVGSAISKAASAAANETSLLLGVEKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDSLDEFKVHIESQTLFRQLVKLRERHRIAIRIHNLKSRVEEVSSRNTRYNLVEPISSGTEDDMDSYAEDIRNQSARNVDEAELVGFSDSKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDMESNKNMQKMVERIVNKCGRLPLAILTIGAVLATKHVSEWEKFYEQLPSELEINPSLEALRRMVTLGYNHLPSHLKPCFLYLSIFPEDFEIKRNRLVGRWIAEGFVRPKVGMTTKDVGESYFNELINRSMIQRSRVGIAGKIKTCRIHDIIRDITVSISRQENFVLLPMGDGSDLVQENTRHIAFHGSMSCKTGLDWSIIRSLAIFGDRPKSLAHAVCLDQLRMLRVLDLEDVTFLITQKDFDRIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMLRTYIAALPSEISKLQCLHTLRCSRKFVYDNFSLNHPMKCITNTICLPKVFTPLVSRDDRAKQIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGHLSKLRKLGVITKGSTKEKCKILYAAIEKLSSLQSLYVNAALLSDIETLECLDSISSPPPLLRTLGLNGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLYLYWNAYLGEKLVFKTGAFPNLRTLRIYELDQLREMRFEDGSSPLLEKIEISCCRLESGIIGIIHLPRLKEISLEYKSKVARLGQLEGEVNTHPNRPVLRMDSDRRDHDLGAEAEGSSIEVQTADPVPDAEGSVTVAVEATDPLPEQEGESSQSQVITLTTNDSEEIGTAQAG

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF127
14-966 PTHR11017:SF127,UNCHARACTERIZED

GSAISKAASAAANETSLLLGVEKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDSLDEFKVHIESQTLFRQLVKLRERHRIAIRIHNLKSRVEEVSSRNTRYNLVEPISSGTEDDMDSYAEDIRNQSARNVDEAELVGFSDSKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDMESNKNMQKMVERIVNKCGRLPLAILTIGAVLATKHVSEWEKFYEQLPSELEINPSLEALRRMVTLGYNHLPSHLKPCFLYLSIFPEDFEIKRNRLVGRWIAEGFVRPKVGMTTKDVGESYFNELINRSMIQRSRVGIAGKIKTCRIHDIIRDITVSISRQENFVLLPMGDGSDLVQENTRHIAFHGSMSCKTGLDWSIIRSLAIFGDRPKSLAHAVCLDQLRMLRVLDLEDVTFLITQKDFDRIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMLRTYIAALPSEISKLQCLHTLRCSRKFVYDNFSLNHPMKCITNTICLPKVFTPLVSRDDRAKQIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGHLSKLRKLGVITKGSTKEKCKILYAAIEKLSSLQSLYVNAALLSDIETLECLDSISSPPPLLRTLGLNGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLYLYWNAYLGEKLVFKTGAFPNLRTLRIYELDQLREMRFEDGSSPLLEKIEISCCRLESGIIGIIHLPRLKEISLEYKSKVARLGQLEGEVNTHPNRPVLRMDSDRRD

HMMPanther: PTHR11017
14-966 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GSAISKAASAAANETSLLLGVEKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDSLDEFKVHIESQTLFRQLVKLRERHRIAIRIHNLKSRVEEVSSRNTRYNLVEPISSGTEDDMDSYAEDIRNQSARNVDEAELVGFSDSKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDMESNKNMQKMVERIVNKCGRLPLAILTIGAVLATKHVSEWEKFYEQLPSELEINPSLEALRRMVTLGYNHLPSHLKPCFLYLSIFPEDFEIKRNRLVGRWIAEGFVRPKVGMTTKDVGESYFNELINRSMIQRSRVGIAGKIKTCRIHDIIRDITVSISRQENFVLLPMGDGSDLVQENTRHIAFHGSMSCKTGLDWSIIRSLAIFGDRPKSLAHAVCLDQLRMLRVLDLEDVTFLITQKDFDRIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMLRTYIAALPSEISKLQCLHTLRCSRKFVYDNFSLNHPMKCITNTICLPKVFTPLVSRDDRAKQIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGHLSKLRKLGVITKGSTKEKCKILYAAIEKLSSLQSLYVNAALLSDIETLECLDSISSPPPLLRTLGLNGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLYLYWNAYLGEKLVFKTGAFPNLRTLRIYELDQLREMRFEDGSSPLLEKIEISCCRLESGIIGIIHLPRLKEISLEYKSKVARLGQLEGEVNTHPNRPVLRMDSDRRD

superfamily: SSF52540
151-405 SSF52540

RNQSARNVDEAELVGFSDSKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDMESNKNMQKMVERIVNKCGRLPLAILTIGAVLATKHVSEWEKFYEQLPSEL

Gene3D: G3DSA:3.40.50.300
169-322 G3DSA:3.40.50.300

SKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEK

HMMPfam: PF00931
IPR002182
174-462 NB-ARC,NBS
NB-ARC

LEMIDTNANDGPAKVICVVGMGGLGKTALSRKIFESEEDIRKNFPCIAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFVILDDLWILHDWNWINEIAFPKNNKKGSRIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDMESNKNMQKMVERIVNKCGRLPLAILTIGAVLATKHVSEWEKFYEQLPSELEINPSLEALRRMVTLGYNHLPSHLKPCFLYLSIFPEDFEIKRNRLVGRWIAEGFVRP

FPrintScan: PR00364
IPR000767
188-203 DISEASERSIST
Disease resistance protein

VICVVGMGGLGKTALS

FPrintScan: PR00364
IPR000767
273-287 DISEASERSIST
Disease resistance protein

ELKEKRYFVILDDLW

FPrintScan: PR00364
IPR000767
372-386 DISEASERSIST
Disease resistance protein

CGRLPLAILTIGAVL

superfamily: SSF52047
551-888 SSF52047,LRR

WSIIRSLAIFGDRPKSLAHAVCLDQLRMLRVLDLEDVTFLITQKDFDRIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMLRTYIAALPSEISKLQCLHTLRCSRKFVYDNFSLNHPMKCITNTICLPKVFTPLVSRDDRAKQIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGHLSKLRKLGVITKGSTKEKCKILYAAIEKLSSLQSLYVNAALLSDIETLECLDSISSPPPLLRTLGLNGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLYLYWNAYLGEKLVFKTGAFPNLRTLRIYE

Gene3D: G3DSA:3.80.10.10
555-662 G3DSA:3.80.10.10

RSLAIFGDRPKSLAHAVCLDQLRMLRVLDLEDVTFLITQKDFDRIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMLRTYIAALPSEISKLQCLHTLRCSRKFV

FPrintScan: PR00364
IPR000767
574-590 DISEASERSIST
Disease resistance protein

DQLRMLRVLDLEDVTFL

Gene3D: G3DSA:3.80.10.10
697-779 G3DSA:3.80.10.10

QIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGHLSKLRKLGVITKGSTKEKCKILYAAIEKLSS

Gene3D: G3DSA:3.80.10.10
780-935 G3DSA:3.80.10.10

LQSLYVNAALLSDIETLECLDSISSPPPLLRTLGLNGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLYLYWNAYLGEKLVFKTGAFPNLRTLRIYELDQLREMRFEDGSSPLLEKIEISCCRLESGIIGIIHLPRLKEISLEY


Diseases

Disease Pathogen Avirulence gene
Rice blast disease

List of References



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Analyses

Blast

Blast matches against Reference R-Genes. Show


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