PRGDB00061449 (Xa5)

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Xa5
Gene Type Reference_R-Genes,_manually_curated
GenBank 55585038 (AY643716)
Gene Class Other
Domain Type
Chromosome 5
Gene Species Oryza sativa Indica Group

Comment?

Oryza sativa (indica cultivar-group) transcription factor IIA gamma subunit (TFIIAy) mRNA, partial cds.

DNA Sequence

ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGAGCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAA


Protein sequences

Name Description Sequence
transcription factor IIA gamma subunit transcription factor IIA gamma subunit [Oryza sativa Indica Group].

MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ

Domains

Domain Start-End Description Sequence

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ

HMMPanther: PTHR10966
IPR003194
1-106 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ

BlastProDom: PD009224
IPR015872
1-50 Q7FPX2_ORYSA_Q7FPX2;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDS

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK

Gene3D: G3DSA:2.30.18.10
IPR009088
55-104 no description
Transcription factor IIA, beta-barrel

SKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLL


Diseases

Disease Pathogen Avirulence gene
Bacterial Blight Xanthomonas oryzae

List of References



List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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