PRGDB00061459 (Pi5-2)
| Pi5-2 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 213958602 (EU869186) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Chromosome | 9 |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGGCCACAGCCGGCGCTGCCGTTGACCGGCTTCTACGCCGTCTGGCCTCCGGTGCTGGCCGTCTGGAGCTGCCCTCGAGCATAGACGAGGACATGGCGCATGTAAAGCGAACCCTGGCGAGGTTGCAAGATGTGCTGCTAACCGTAGAAGGGAAATACTTCAAGATGGGCGCGGAGGTGCAGGAATGGATGAGGAAGATCAAGCAGATTGCTTACGGCATTCAAGATTTGCTGGATGAGTTTGAGGACAGTAGCGGCACCGGATCCCAAAGGAACGGCTCCAGGATTTCAGAGGGAACGCTATCGTGTTCGTCAGCTCCATTTTTCTGCCATCTTAGTAGATCACAAAGAATAAGGGTACTGAAAAGAAAGTTAGATCAATCAACAAAAGATACTTCTGTATTTAGTTTACTGCAGCACAGCTTATCCAATCTTGACAAATCCAATGAGCAAGAAGTTCTGTTACATAGAACTGAAATCATTGGAAGGGATACTGACAAAGAAAATATAAAAAATCTATTGTTACAAAATGATGTGGATAAATTACCCATCATTCCGATAGTTGGCCTTGCGGGGCTGGGAAAAACGGCTGTAGCAAAATTGATTTTCCATGAACAGGGAGAAGGGTGGAATTTTGATCAGCGCATATGGGTCCATTTGGACAAGAAATTGGATCTTAACAAAATTGCTAACAGTATTATCTCACAAGTTAACCAATCAGTAGATACCACAAAGAATCAAATTCAGAACAACTTACAGTTTAAAAGGAATTGTCTTCAAGAAGTTCTTTGTGACCAAAGCAGTTTGATAGTATTGGATGACTTATTTAGCACAGAGGAAAACCAGATTGCAGAGTTGAAGGAAATGTTGAGGGGTACAAAGAAGGGAACCAAGATCATTGTGACTACTTCCAGTGAAATATCTGCAGAGCTAATACACACAGTTCCACCATACAAGTTGGGCCCTTTATCTGAAGGTGACTGTTCAACAATATTTTGTCAAAGAGCATTTGGTGATGGACATGAAAACAGCAGCCTCACTGAAATTGCGAAGCAAATTGTGAAAAGGTGTGAAGGCATACCGGCTGTAGCTTATTCTCTTGGTTCATTGGTTCGTAACAAGAATAAGGAGGCCTGGTTATATGCAAGAGACAAAGAAATATGGGAATTACCAACATTATTTCCTAATGGGTTTGAATTACTTGCATCGTTCAGTGAAATGTATATATGTATGCCCTCGGCTTTAAAATCATGCTTTGCATACTTATCAACCATACCCAAAGGAACAATAATTGATAGGGAGAAACTTATTGAACAGTGGATAGCACTTGACATGGTTGGGTCGAAGCATGGGACCTTACCTGCTTATGTGCAAGGAGAGATGTTCATCCAGCAACTTCTATCGATATCTTTTCTTCAAGTCCGAAACAAGCCCTCTGCCACCAGAATCAGAGACACCAATCAATCTAAGGAACTCCGTATCCATAACTTGGTCCATGACTTTGCAATGTATGTTGCCCGTGATGATCTCATAATTCTGGATGGTGGAGAGAAGGCCAGTAGCCTTAGAAAAAACATCCATGTCTTCTATGGAGTTGTGAACAATGATATTGGACAATCAGCACTCCGGAAAGGTCTGCTCAGCAGTGCAAGGGCAGTACACTTCAAGAACTGTAAGTCAGAAAAGCTTCTTGTAGAGGCATTCTCAGTACTGAATCATTTGCGTGTCTTGGATCTTAGTGGTTGTTGTATTGTAGAATTACCGGATTTCATTACCAATTTGAGGCATCTGAGATACCTGGATGTTTCATATTCAAGGATTCTGTCATTGTCAACCCAGCTAACTAGTTTGAGTAATCTGGAGGTATTGGATCTTTCAGAAACTTCTCTTGAGTTGTTACCATCTTCAATTGGCTCATTTGAAAAATTAAAATACTTGAATCTACAAGGATGTGATAAACTTGTAAACTTGCCCCCATTTGTCTGTGATCTCAAGAGGCTAGAGAATCTCAACCTATCATACTGTTATGGAATCACTATGCTACCCCCAAATCTATGGAAACTTCATGAACTTCGAATTTTGGACCTCTCTAGTTGCACAGATCTTCAAGAAATGCCATATTTATTTGGTAACTTAGCAAGCTTAGAAAATCTAAACATGTCGAAATGCTCCAAGCTTGAACAACTACCAGAATCTCTTGGTGATCTTTGTTACCTACGATCCTTTAACCTATCAGGTTGTTCTGGGCTTAAGATGCTGCCAGAATCTCTGAAAAATCTTACAAATTTAGAGTATATTAATTTGTCAAATATTGGGGAGAGTATCGATTTCAATCAGATACAACAACTACGGCACATTCTCAAGAAAACATTTTTTTCTGGAGATATTGGAGGGAGTGAACTCCAAACATGTGAACACGCTGCTGATTCTGCAGACAGTAAGAAGGAAATTACAATGGATTTTTCTGCAAATTTGCATGGAAATATTACTTTGCCACCCAAGTGCTCAACTGAAGAGAAATCTGGTGAAAACTCTGAACGATTCCTATCAGCTGCAGTTAGGGAGGATTCAAGCAGCACTGATGTTTCTACATATGTCAAGCCGGTGGTGTCCTCACTTATTGGAGTGCTGCGCAGACCGACTAGGTTGGATGTGCCAGCTGGCGCGATGGCTTCTCAGGTTGGCCTGGCCCAGATGCCATCTAGCAACAATGGTAAGGCTGGACCGCATCCAACAATGGCTGCAGCTCAGACCCCGGAGATTGATCAACCTGTGCATAAAAGGGTCCGGTGGGATGATATAATAGACTACTCCCGTCCTCCCAACTCAAAACCTGCCAGGAGTGCATCTCTTGTGCAGTCGACCGATCTGTCGACACCAAAGAAAAGTTATAAAAAAATTCACTCAATGCCGGTGGTCTATTCGTCAATTCCAAAAGGGAGTTCCGGAGGAACATACTTGATGCCAGCAAAGGCTATCGCTTCTTCCTACAGGAGGTATAGCCCACAGAGATGGGAACAGCACATTGGTTATCAAGGAACGGATGAAGATGAACTGATGGTCGTGCCACCATTTGGTGAGTGGGATCAGTCCCCCACATTACGAAAATCTGACTTTCGGTATGAGAAGGTCTTCGCTAAACTCACCGAAGAGAAGATGTCTGGTCAAAGGCAGAAACCGCAACAGGTATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pi5-2 | Pi5-2 [Oryza sativa Japonica Group]. | MATAGAAVDRLLRRLASGAGRLELPSSIDEDMAHVKRTLARLQDVLLTVEGKYFKMGAEVQEWMRKIKQIAYGIQDLLDEFEDSSGTGSQRNGSRISEGTLSCSSAPFFCHLSRSQRIRVLKRKLDQSTKDTSVFSLLQHSLSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSKHGTLPAYVQGEMFIQQLLSISFLQVRNKPSATRIRDTNQSKELRIHNLVHDFAMYVARDDLIILDGGEKASSLRKNIHVFYGVVNNDIGQSALRKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRHILKKTFFSGDIGGSELQTCEHAADSADSKKEITMDFSANLHGNITLPPKCSTEEKSGENSERFLSAAVREDSSSTDVSTYVKPVVSSLIGVLRRPTRLDVPAGAMASQVGLAQMPSSNNGKAGPHPTMAAAQTPEIDQPVHKRVRWDDIIDYSRPPNSKPARSASLVQSTDLSTPKKSYKKIHSMPVVYSSIPKGSSGGTYLMPAKAIASSYRRYSPQRWEQHIGYQGTDEDELMVVPPFGEWDQSPTLRKSDFRYEKVFAKLTEEKMSGQRQKPQQV |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 36-783 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KRTLARLQDVLLTVEGKYFKMGAEVQEWMRKIKQIAYGIQDLLDEFEDSSGTGSQRNGSRISEGTLSCSSAPFFCHLSRSQRIRVLKRKLDQSTKDTSVFSLLQHSLSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSKHGTLPAYVQGEMFIQQLLSISFLQVRNKPSATRIRDTNQSKELRIHNLVHDFAMYVARDDLIILDGGEKASSLRKNIHVFYGVVNNDIGQSALRKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQL |
| superfamily: SSF52540 | 142-392 | SSF52540 | LSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPT |
| Gene3D: G3DSA:3.40.50.300 | 161-305 | G3DSA:3.40.50.300 | IGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSS |
| HMMPfam: PF00931 IPR002182
|
164-449 | NB-ARC,NBS NB-ARC
|
DTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSK |
| FPrintScan: PR00364 IPR000767
|
184-199 | DISEASERSIST Disease resistance protein
|
IIPIVGLAGLGKTAVA |
| FPrintScan: PR00364 IPR000767
|
262-276 | DISEASERSIST Disease resistance protein
|
VLCDQSSLIVLDDLF |
| FPrintScan: PR00364 IPR000767
|
357-371 | DISEASERSIST Disease resistance protein
|
CEGIPAVAYSLGSLV |
| Gene3D: G3DSA:3.80.10.10 | 543-785 | G3DSA:3.80.10.10 | RKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRH |
| superfamily: SSF52047 | 547-789 | SSF52047,LRR | LSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRHILKK |
| HMMPfam: PF13855 | 553-607 | LRR_8,Leucine rich repeat | VHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRI |
| ProfileScan: PS51450 IPR001611
|
573-594 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLRVLDLSGCCIVELPDFITNL |
| ProfileScan: PS51450 IPR001611
|
596-618 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLRYLDVSYSRILSLSTQLTSLS |
| ProfileScan: PS51450 IPR001611
|
619-640 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLEVLDLSETSLELLPSSIGSF |
| HMMPfam: PF12799 | 619-660 | LRR_4,Leucine Rich repeats (2 copies) | NLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPF |
| ProfileScan: PS51450 IPR001611
|
642-664 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLKYLNLQGCDKLVNLPPFVCDL |
| ProfileScan: PS51450 IPR001611
|
666-689 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
RLENLNLSYCYGITMLPPNLWKLH |
| HMMPfam: PF00560 IPR001611
|
666-688 | LRR_1 Leucine-rich repeat
|
RLENLNLSYCYGITMLPPNLWKL |
| FPrintScan: PR00364 IPR000767
|
686-702 | DISEASERSIST Disease resistance protein
|
WKLHELRILDLSSCTDL |
| ProfileScan: PS51450 IPR001611
|
690-712 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
ELRILDLSSCTDLQEMPYLFGNL |
| HMMPfam: PF00560 IPR001611
|
739-760 | LRR_1 Leucine-rich repeat
|
LRSFNLSGCSGLKMLPESLKNL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Rice blast disease | Magnaporthe grisea |
List of References
Sang-Kyu Lee, Min-Young Song, Young-Su Seo, Hye-Kyung Kim, Seho Ko, Pei-Jian Cao, Jung-Pil Suh, Gihwan Yi, Jae-Hwan Roh, Sichul Lee, Gynheung An, Tae-Ryong Hahn, Guo-Liang Wang, Pamela Ronald, Jong-Seong Jeon
Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes.
Genetics: 2009, 181(4);1627-38
PubMed:19153255
WorldCat.org
DOI
(P p)
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