PRGDB00061459 (Pi5-2)

Pi5-2
Gene Type	Reference_R-Genes,_manually_curated
GenBank	213958602 (EU869186)
Gene Class	CNL
Domain Type	NBS, LRR, Others
Chromosome	9
Gene Species	Oryza sativa Japonica Group
	Comment?

Oryza sativa Japonica Group Pi5-2 (Pi5-2) gene, complete cds.

DNA Sequence

ATGGCCACAGCCGGCGCTGCCGTTGACCGGCTTCTACGCCGTCTGGCCTCCGGTGCTGGCCGTCTGGAGCTGCCCTCGAGCATAGACGAGGACATGGCGCATGTAAAGCGAACCCTGGCGAGGTTGCAAGATGTGCTGCTAACCGTAGAAGGGAAATACTTCAAGATGGGCGCGGAGGTGCAGGAATGGATGAGGAAGATCAAGCAGATTGCTTACGGCATTCAAGATTTGCTGGATGAGTTTGAGGACAGTAGCGGCACCGGATCCCAAAGGAACGGCTCCAGGATTTCAGAGGGAACGCTATCGTGTTCGTCAGCTCCATTTTTCTGCCATCTTAGTAGATCACAAAGAATAAGGGTACTGAAAAGAAAGTTAGATCAATCAACAAAAGATACTTCTGTATTTAGTTTACTGCAGCACAGCTTATCCAATCTTGACAAATCCAATGAGCAAGAAGTTCTGTTACATAGAACTGAAATCATTGGAAGGGATACTGACAAAGAAAATATAAAAAATCTATTGTTACAAAATGATGTGGATAAATTACCCATCATTCCGATAGTTGGCCTTGCGGGGCTGGGAAAAACGGCTGTAGCAAAATTGATTTTCCATGAACAGGGAGAAGGGTGGAATTTTGATCAGCGCATATGGGTCCATTTGGACAAGAAATTGGATCTTAACAAAATTGCTAACAGTATTATCTCACAAGTTAACCAATCAGTAGATACCACAAAGAATCAAATTCAGAACAACTTACAGTTTAAAAGGAATTGTCTTCAAGAAGTTCTTTGTGACCAAAGCAGTTTGATAGTATTGGATGACTTATTTAGCACAGAGGAAAACCAGATTGCAGAGTTGAAGGAAATGTTGAGGGGTACAAAGAAGGGAACCAAGATCATTGTGACTACTTCCAGTGAAATATCTGCAGAGCTAATACACACAGTTCCACCATACAAGTTGGGCCCTTTATCTGAAGGTGACTGTTCAACAATATTTTGTCAAAGAGCATTTGGTGATGGACATGAAAACAGCAGCCTCACTGAAATTGCGAAGCAAATTGTGAAAAGGTGTGAAGGCATACCGGCTGTAGCTTATTCTCTTGGTTCATTGGTTCGTAACAAGAATAAGGAGGCCTGGTTATATGCAAGAGACAAAGAAATATGGGAATTACCAACATTATTTCCTAATGGGTTTGAATTACTTGCATCGTTCAGTGAAATGTATATATGTATGCCCTCGGCTTTAAAATCATGCTTTGCATACTTATCAACCATACCCAAAGGAACAATAATTGATAGGGAGAAACTTATTGAACAGTGGATAGCACTTGACATGGTTGGGTCGAAGCATGGGACCTTACCTGCTTATGTGCAAGGAGAGATGTTCATCCAGCAACTTCTATCGATATCTTTTCTTCAAGTCCGAAACAAGCCCTCTGCCACCAGAATCAGAGACACCAATCAATCTAAGGAACTCCGTATCCATAACTTGGTCCATGACTTTGCAATGTATGTTGCCCGTGATGATCTCATAATTCTGGATGGTGGAGAGAAGGCCAGTAGCCTTAGAAAAAACATCCATGTCTTCTATGGAGTTGTGAACAATGATATTGGACAATCAGCACTCCGGAAAGGTCTGCTCAGCAGTGCAAGGGCAGTACACTTCAAGAACTGTAAGTCAGAAAAGCTTCTTGTAGAGGCATTCTCAGTACTGAATCATTTGCGTGTCTTGGATCTTAGTGGTTGTTGTATTGTAGAATTACCGGATTTCATTACCAATTTGAGGCATCTGAGATACCTGGATGTTTCATATTCAAGGATTCTGTCATTGTCAACCCAGCTAACTAGTTTGAGTAATCTGGAGGTATTGGATCTTTCAGAAACTTCTCTTGAGTTGTTACCATCTTCAATTGGCTCATTTGAAAAATTAAAATACTTGAATCTACAAGGATGTGATAAACTTGTAAACTTGCCCCCATTTGTCTGTGATCTCAAGAGGCTAGAGAATCTCAACCTATCATACTGTTATGGAATCACTATGCTACCCCCAAATCTATGGAAACTTCATGAACTTCGAATTTTGGACCTCTCTAGTTGCACAGATCTTCAAGAAATGCCATATTTATTTGGTAACTTAGCAAGCTTAGAAAATCTAAACATGTCGAAATGCTCCAAGCTTGAACAACTACCAGAATCTCTTGGTGATCTTTGTTACCTACGATCCTTTAACCTATCAGGTTGTTCTGGGCTTAAGATGCTGCCAGAATCTCTGAAAAATCTTACAAATTTAGAGTATATTAATTTGTCAAATATTGGGGAGAGTATCGATTTCAATCAGATACAACAACTACGGCACATTCTCAAGAAAACATTTTTTTCTGGAGATATTGGAGGGAGTGAACTCCAAACATGTGAACACGCTGCTGATTCTGCAGACAGTAAGAAGGAAATTACAATGGATTTTTCTGCAAATTTGCATGGAAATATTACTTTGCCACCCAAGTGCTCAACTGAAGAGAAATCTGGTGAAAACTCTGAACGATTCCTATCAGCTGCAGTTAGGGAGGATTCAAGCAGCACTGATGTTTCTACATATGTCAAGCCGGTGGTGTCCTCACTTATTGGAGTGCTGCGCAGACCGACTAGGTTGGATGTGCCAGCTGGCGCGATGGCTTCTCAGGTTGGCCTGGCCCAGATGCCATCTAGCAACAATGGTAAGGCTGGACCGCATCCAACAATGGCTGCAGCTCAGACCCCGGAGATTGATCAACCTGTGCATAAAAGGGTCCGGTGGGATGATATAATAGACTACTCCCGTCCTCCCAACTCAAAACCTGCCAGGAGTGCATCTCTTGTGCAGTCGACCGATCTGTCGACACCAAAGAAAAGTTATAAAAAAATTCACTCAATGCCGGTGGTCTATTCGTCAATTCCAAAAGGGAGTTCCGGAGGAACATACTTGATGCCAGCAAAGGCTATCGCTTCTTCCTACAGGAGGTATAGCCCACAGAGATGGGAACAGCACATTGGTTATCAAGGAACGGATGAAGATGAACTGATGGTCGTGCCACCATTTGGTGAGTGGGATCAGTCCCCCACATTACGAAAATCTGACTTTCGGTATGAGAAGGTCTTCGCTAAACTCACCGAAGAGAAGATGTCTGGTCAAAGGCAGAAACCGCAACAGGTATGA

Protein sequences

Name	Description	Sequence
Pi5-2	Pi5-2 [Oryza sativa Japonica Group].	MATAGAAVDRLLRRLASGAGRLELPSSIDEDMAHVKRTLARLQDVLLTVEGKYFKMGAEVQEWMRKIKQIAYGIQDLLDEFEDSSGTGSQRNGSRISEGTLSCSSAPFFCHLSRSQRIRVLKRKLDQSTKDTSVFSLLQHSLSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSKHGTLPAYVQGEMFIQQLLSISFLQVRNKPSATRIRDTNQSKELRIHNLVHDFAMYVARDDLIILDGGEKASSLRKNIHVFYGVVNNDIGQSALRKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRHILKKTFFSGDIGGSELQTCEHAADSADSKKEITMDFSANLHGNITLPPKCSTEEKSGENSERFLSAAVREDSSSTDVSTYVKPVVSSLIGVLRRPTRLDVPAGAMASQVGLAQMPSSNNGKAGPHPTMAAAQTPEIDQPVHKRVRWDDIIDYSRPPNSKPARSASLVQSTDLSTPKKSYKKIHSMPVVYSSIPKGSSGGTYLMPAKAIASSYRRYSPQRWEQHIGYQGTDEDELMVVPPFGEWDQSPTLRKSDFRYEKVFAKLTEEKMSGQRQKPQQV

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	36-783	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	KRTLARLQDVLLTVEGKYFKMGAEVQEWMRKIKQIAYGIQDLLDEFEDSSGTGSQRNGSRISEGTLSCSSAPFFCHLSRSQRIRVLKRKLDQSTKDTSVFSLLQHSLSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSKHGTLPAYVQGEMFIQQLLSISFLQVRNKPSATRIRDTNQSKELRIHNLVHDFAMYVARDDLIILDGGEKASSLRKNIHVFYGVVNNDIGQSALRKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQL
superfamily: SSF52540	142-392	SSF52540	LSNLDKSNEQEVLLHRTEIIGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPT
Gene3D: G3DSA:3.40.50.300	161-305	G3DSA:3.40.50.300	IGRDTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSS
HMMPfam: PF00931 IPR002182	164-449	NB-ARC,NBS NB-ARC	DTDKENIKNLLLQNDVDKLPIIPIVGLAGLGKTAVAKLIFHEQGEGWNFDQRIWVHLDKKLDLNKIANSIISQVNQSVDTTKNQIQNNLQFKRNCLQEVLCDQSSLIVLDDLFSTEENQIAELKEMLRGTKKGTKIIVTTSSEISAELIHTVPPYKLGPLSEGDCSTIFCQRAFGDGHENSSLTEIAKQIVKRCEGIPAVAYSLGSLVRNKNKEAWLYARDKEIWELPTLFPNGFELLASFSEMYICMPSALKSCFAYLSTIPKGTIIDREKLIEQWIALDMVGSK
FPrintScan: PR00364 IPR000767	184-199	DISEASERSIST Disease resistance protein	IIPIVGLAGLGKTAVA
FPrintScan: PR00364 IPR000767	262-276	DISEASERSIST Disease resistance protein	VLCDQSSLIVLDDLF
FPrintScan: PR00364 IPR000767	357-371	DISEASERSIST Disease resistance protein	CEGIPAVAYSLGSLV
Gene3D: G3DSA:3.80.10.10	543-785	G3DSA:3.80.10.10	RKGLLSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRH
superfamily: SSF52047	547-789	SSF52047,LRR	LSSARAVHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRILSLSTQLTSLSNLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPFVCDLKRLENLNLSYCYGITMLPPNLWKLHELRILDLSSCTDLQEMPYLFGNLASLENLNMSKCSKLEQLPESLGDLCYLRSFNLSGCSGLKMLPESLKNLTNLEYINLSNIGESIDFNQIQQLRHILKK
HMMPfam: PF13855	553-607	LRR_8,Leucine rich repeat	VHFKNCKSEKLLVEAFSVLNHLRVLDLSGCCIVELPDFITNLRHLRYLDVSYSRI
ProfileScan: PS51450 IPR001611	573-594	LRR,Leucine-rich repeat profile. Leucine-rich repeat	HLRVLDLSGCCIVELPDFITNL
ProfileScan: PS51450 IPR001611	596-618	LRR,Leucine-rich repeat profile. Leucine-rich repeat	HLRYLDVSYSRILSLSTQLTSLS
ProfileScan: PS51450 IPR001611	619-640	LRR,Leucine-rich repeat profile. Leucine-rich repeat	NLEVLDLSETSLELLPSSIGSF
HMMPfam: PF12799	619-660	LRR_4,Leucine Rich repeats (2 copies)	NLEVLDLSETSLELLPSSIGSFEKLKYLNLQGCDKLVNLPPF
ProfileScan: PS51450 IPR001611	642-664	LRR,Leucine-rich repeat profile. Leucine-rich repeat	KLKYLNLQGCDKLVNLPPFVCDL
ProfileScan: PS51450 IPR001611	666-689	LRR,Leucine-rich repeat profile. Leucine-rich repeat	RLENLNLSYCYGITMLPPNLWKLH
HMMPfam: PF00560 IPR001611	666-688	LRR_1 Leucine-rich repeat	RLENLNLSYCYGITMLPPNLWKL
FPrintScan: PR00364 IPR000767	686-702	DISEASERSIST Disease resistance protein	WKLHELRILDLSSCTDL
ProfileScan: PS51450 IPR001611	690-712	LRR,Leucine-rich repeat profile. Leucine-rich repeat	ELRILDLSSCTDLQEMPYLFGNL
HMMPfam: PF00560 IPR001611	739-760	LRR_1 Leucine-rich repeat	LRSFNLSGCSGLKMLPESLKNL

Diseases

Disease	Pathogen	Avirulence gene
Rice blast disease	Magnaporthe grisea

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Analyses

Blast

Blast matches against Reference R-Genes. Show