PRGDB00061511 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438238 (FJ842828) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAATCATACAAGCTTGGAAACAGAGTCATGGCTTCTCTTCCTTGTCATTCTCCTTCAGCCTCAGCCATCTGGAAAACGGACGTTTTCGTGAGTTTTAGAGGCGAAGACGTGCGCAAAACGTTTGTGAGCCATCTGTTCTGCGAGCTCGATCGGATGGGGATCAACGCGTTCAGAGACGACTTGGATCTCGAGAGAGGCAAGCATATCTCCTCAGAGCTTGTGGATACGATCAGAGGCTCCAGGTTCGCGGTCGTCGTGGTCTCTAGGAACTACGCATCTTCGAGCTGGTGCTTGGACGAGCTCTTGGAGATCATGGAACGTAAGAACACGGTTGATCAGAAGACAATCATACCCGTGTTCTACGAGGTTGATCCTTCTGATGTGAGAAGACAGACTGGGAGTTTCGGTGAGGGTGTTGAGAGTCATAGCGACAAGAAGAAGGTGATGAAATGGAGAGAAGCTTTGACGCAGTTAGCTGCTATATCTGGTGAAGATTCTCGGAACTGGAGGGATGAGTCGAAGCTAATTAAGAAGATTGTTAAAGACATATCTGATAGATTGGTTTCCACTTCACTGGATGATACAGATGAGTTGATTGGAATGAGTTCTCATATGGACTTTCTGCAGTCTATGATGTCTATAGAGGAGCAAGATGTTCGCACGGTAGGTATTTGGGGAATGGGTGGAGTTGGGAAAACTACTATTGCTAAATACTTATACAACAAGCTCTCATCTCGGTTTCAAGCTCATTGCTTCATGGAGAATGTGAAGGAAGTGTGTAACAGATATGGAGTTGAGCGTCTACAGGGAGAGTTCTTATGCAGAATGTTTCGAGAGAGAGACTCGGTTTCTTGTTCGAGCATGATAAAGGAAAGGTTCAGGCGTAAAAGGGTTTTGATTGTACTTGATGATGTAGATAGATCTGAGCAGCTGGATGGATTGGTTAAGGAGACTGGTTGGTTTGGTCCTGGAAGCAGAATCATTGTTACAACGAGAGATAGACATTTGCTAGTTTCTCATGGCATAGAACTGATATATAAAGTTAAGTGTTTACCCGAAAAAGAAGCTTTACATCTCTTTTGCAACTATGCTTTCAGAAACGAGACTATAGCTCCAGAGTTTAGGGTGTTAGCAGTTCAAGCTGTAAACTATGCTTTTGGTCTTCCACTGGCTTTGAGAGTTTTAGGTTCTTTCCTTTATCGAAGAGGCGAAAGAGAATGGGAAAGCACACTCGCTAGGCTTGAAACTTCTCCTCATAGTGATATCATGGAGGTTCTGAGAGTTAGCTACGATGGATTGGATGAGCAGGAGAAGGCTATTTTTCTCTACATATCATGTTTCTACAACATGAAGCATGTTGATTACGCCACAAGACTTCTTGATATCTGTGGCTATGCCGCTGAAATTGGTATCACGGTTCTCACTGAGAAGTCTTTGATAGTCATATCAAATGGATGCATAAAGATGCATGATTTGGTTGAACAGATGGGTAGAGAACTTGTACGCCGACAAGCTGAACGGTTTCTTTTATGGAGACCTGAAGACATCTGTGATCTGCTGTCAGAAACTACTGGAACAAGTGTTGTTGAAGGAATGTCACTTAACATGTCTGAAGTATCTGAGGTATTGGCTAGTGATCAAGGTTTTGAGGGATTGTCTAATCTCAAGCTTCTCAACTTCTATGATCTTTCATATGATGGAGAGACTAGAGTGCATCTACCTAATGGCCTCACTTATCTACCGCGCAAGCTTCGTTATCTACGCTGGGATGGATACCCTTTAAACTCTTTGCCTTCAAGGTTTCATCCGGAGTTTCTTGTTGAACTTTTTATGAGTAATAGCCATCTCCACTATCTTTGGAATGGAATCCAGCCTCTTAGGAAACTGAAGAAGATGGATCTTTCTCGTTGTAAATACCTAATCGAAATTCCGGATCTCTCAAAAGCCACAAACCTTGAGGAACTCAACCTTTCCTATTGCCAAAGCTTAACTGAGGTTACTCCATCTATCAAAAACCTCCAGAAACTTTATTGTTTCTACTTGACTAACTGCACCAAACTCAAGAAGATACCAAGTGGAATCGCTTTGAAGTCGCTTGAAACAGTTGGAATGAACGGATGCTCAAGCCTAATGCATTTTCCAGAGTTTTCTTGGAATGCCAGAAGACTCTACCTGAGCAGTACAAAGATAGAGGAACTGCCATCATCGATGATCAGCCGTCTCTCTTGTCTGGTTGAGTTGGATATGTCAGATTGCCAGAGTATCAGGACTCTTCCGAGTTCTGTAAAGCACTTGGTGTCACTTAAATCACTGAGTTTGAACGGTTGCAAACATCTTGAGAACCTCCCGGACTCATTACTGAGCCTCACATGTCTTGAAACGCTTGAAGTGTCTGGTTGCCTTAACATCAACGAGTTCCCTCGCCTTGCCAAGAACATAGAAGTTCTGCGTATATCTGAGACATCGATTAATGAAGTTCCTGCAAGAATCTGTGATCTCTCTCAGCTTAGGTCCTTGGATATTTCAGGAAATGAAAAACTTAAATCACTTCCGGTAAGCATTTCTGAGTTAAGATCACTTGAAAAGCTCAAGCTCTCTGGCTGTTGTGTACTTGAGAGCCTTCCGCCAGAGATTTGTCAGACAATGAGCTGCTTGAGGTGGCTTGATTTGGAAAGGACCAGCATCAAAGAACTGCCTGAAAACATTGGTAATTTGATAGCTCTCGAGGTGCTTCAAGCTGGAAGAACAGCGATAAGACGAGCACCATTGTCTATTGCAAGACTTGAACGTCTGCAAGTTTTAGCAATCGGGAATAGCTTCTATACCTCACAAGGTCTGCATTCTCTATGTCCTCACTTATCAATATTTAATGACTTGAGAGCTCTGTGCCTAAGCAACATGAACATGATAGAGATCCCAAACAGTATTGGTAACTTGTGGAGTCTATCAGAACTAGATTTGAGTGGTAACAACTTTGAACACATCCCCGCGAGCATCAGACGACTCACCAGGCTGAGCAGACTGGATGTTAACAATTGTCAGAGACTTCAAGCACTGCCTGATGACCTTCCACGGCGTCTCTTGTATATCTACGCCCATGGCTGCACATCACTAGTGAGTATCTCAGGCTGCTTCAAGCCTTGTTGTCTGCGCAAGCTTGTAGCGAGCAACTGTTACAAACTGGATCAAGAGGCACAGATTCTCATCCACCGTAACATGAAGCTAGATGCAGCAAAACCAGAACACTCTTATTTTCCTGGAAGAGATGTGCCATCTTGTTTCAATCACCAAGCCATGGGATCTTCCTTGAGAATACGTCAACCATCATCTGACATTCTGGGATTTTCCGCATGCATCATGATTGGAGTTGATGGAGAGTTGATAGGTATAAACATACTTATTCGAGAAGAAGGTGGAAAGGAGCTGAGCTGGCAAAGTAGTTCCGGCGAAGAGAAGTTTACCGGCGAAATCGTAAGAATGTCGAAGGCGAAAGTTGGGGAGCCCAGTCCGTCGCGAGACGAAACGGAGGAGGAAACCGATAACGAGTTGCAAGATATGGATCTAGAGTTCTTGAAAGGAGGCTACATTCGATTGAATCGCGCAAGAAAAGAAGCAGATGCTCGATTCGAGGAGCTCAATCAACGACTCGGTTCTATCTTACAGATCTTGGAGAAGTCAAACAATCGCAACGACGATCGTCCTCATCACGATCCAAGATCATCTAATCCTCAGGTATATCACTCGAACTGGGAACGAAATCCGGAGGAACGAGTGCTAGGTTATCGATCTGGTGATATGAATCTTGCAAACAGAGAATCGATGCTGCGAAAGATTGAAATGCCACTGTTCTCCGGGAAGCAACCTTACGTTTGGATTACGGAGGTCGAACGTTGGTTTAGTATTGGGAAGTATGATGACACAGAAAGGTTGGAATTGGTGGGGCTGAGTCTGGAAGGAAAGGTGAAGAAATGGTTTGGATGGGAGTTGAAAAGAAGAGGATTCAGAGATTGGAGGGAGTTCAAAGAGAAATTGGTATTGAGATTTGCTGAATCTATTGAAGAAGAACCAGAAATACGCTTGTTTTCTATCAAACAGACGGGGTCTGTAAGCGATTACATCTCGGAGTTTGAAGAATTGTCAGGGTTGGTTAAAGGATTGGATGATAATCTTTTGATCAAGATTTTTTACACGGGGCTCAACCAAGAGATGAAGGAAGTGATAAGAATAAAGGAGCCAGTGGGATTGGAAAATCATATTGCTGCTGTGTTGAGAATGGAGTCTAGTGCCTTTTGCAAGGTGGTGAGTGAAGCAACTAAACATGACAAGATCGAGCACAAGCAGCATCAACACAACCCACTAAGGTCTTCGTCCCATTACAATTCTCACAGAAGATATGTTGATAGTGAGAATAAGTTTACGAGGGCGGGAGGATCTTCTTCTACGACCGCTCAACAAAAGAAGGAGAGTGAGAATAGCAGTAGTAATGAGAGTAAAGTGAAGAAATACACTAATGAAGAATTGGACAGGATGCGTAAAGAATTCATTTGTTTCAAATGTGGAGCTAAGGGATGGACAAGAGCTCACAAATGTCCAAATAAAGATGTAAGAGTGATGACTACACTCAACGGGTTACAAATGGAAGTCGTGGAGGATCAAGAGGACGACGGAGAAGAGTTCTTCTTTGAGGCTCAGATGCAAGAGTTATGCACATTGTCATTAAACTCGTATTTGGGTGTTGGTTCGCCAAAGACCACCAAGTTATATGGAAAGATTCAGAAGACTGATGTGATAGTGATGCTAGACAGTGGGGCATCTCACAATTTCATTACTCCATCGATTGTGACGAAACTTAAGTTGAAAGTTTGTGCAGAAACAAGTTTCGACATCTTGCTAGGAAATGGAGCCTCAGTCAACAGTTTGGGCGTGTGCAGAGAGGTTTCGTTCCAACTAGCAGATGCGACTTTCACATCAGATTTTATAGCTTTGGAACTCGGAATGGTTGATGTTATTTTAGGCATTCAATGGCTCGAGACCTTAGGAAGATGTGAGGTGGATTGGAAGGAACAAGAACTGTCCTTTATTCATGGAGGAGTTAAAGTGACATTGTTCGGGGATCCATCACTCCACACTTCCAAGCTCTCTATGAAGTCTTTGTCTCCTATTTCTACTAAGGTAGTAAAAGGAAGAGAAGAGCTTTTCACTATCTCTAGTGGGGTAACATCAACCGATCCTATGATTCCGGATAAGCTGTTAGACGTACTGGCTGAGTTTGATCAGGTGTTTGCATTGCCGACGGCTTTGCCTCCTTTTAGAGGAAAGAATCATGCGATCAATCTCAAACCAGGGGTGACTGCTATCTCTGTGAGACCATATCGTTACCCACACAACACTAAGGTGGTGATGGAACAAATGGTCTGCGAAATGTTGGAAGCAGGGATAATCAGAGAGAGCACAAGTCCGTTCTCAAGTCCAGTTTTGTTGGTAAAAAAGAAAGACGGATCATGGAGGTTTTGTATTGATTACAGGGCATTGAACAAGGCTACGATACCGGATAAATTCCCAATTCCTGTAATTGATCAACTATTGGATGAGTTGTATGGCGCCTCCGTTTTTTCTAAGCTGGACTTACGCTCGGGCTATCATCAAATCCGTATGCAAGAAGAAGACATCCCAAAGACTGCTTTCAGGACAGTAGAAGGGCATTATGAGTTCCTAGTGATGCCATTTGGACTCACAAATGCGCCGGCTACATTCCAAGCATTGATGAACTCCATTTTCAAGCCATATCTTCGAAAATTCGTTCTCGTATTCTTTGATGATGTGCTAATATACAGTAAGACTGTCGAGGAACACGCTGAACATTTACGGCTGGTACTTTCAGTGTTACAGGAGCATAAGTTGCTGGCTAACCGTAAGAAGTGTTCGTTTGGTCTTCAGCAGATTGAGTATTTGGGTCATATCATATCCAAGAACGGCGTAGCGACTGATGCGATCAAAACCCAGTGTATGAAAGAGTGGCCATTGCCGAAATCAGTGAAACAATTGAGAGGATTTTTGGGACTAACAGGCTATTACAGGCATTATGTGAAAGGTTATGGTTCGATCGCAAGACCATTGACAGAATTACTAAAAAAGGACGGTTTTCAGTGGTCTAAAGAAGCAGAGTTGGCGTTTGATTCACTTAAGAAAGCAATGGTAGAAGCACCGGTTCTAGCTTTACCAAACTTTGAAAAACCTTTTGTTATTGAGTCAGATGCATCAGGCTTTGGCGTAGGGGCTGTATTGATGCAGGATGGTAAACCAATTGCGTTCTTCAGTCACGGTTTAACAGAGAGAGAGCAGTTGAAACCAGCTTATGAACGCGAGCTGATGGCAGTGGTTTTGGCGGTTCAGAAATGGAAGCACTACTTGTTGGGGCGTCAGTTTGTGGTTCATACAGATCATCGAAGCTTAAAATACCTGTTGGAACAGAAGGAGGTAAATATGGAATATCATCGCTGGCTGACGAAGTTATTGGGCTTTGATTTTATCATCGTGTACAGGCCAGGTTGTGATAATAAGGCAGCGGATGGTTTATCAAGGATTGAGAGGAACGTGGTGAGAGAGATGAGTTCGCTGTTGTTGGCTCTTACTATACCAGCAGCACTTCAAGTGGAGGATATATATAAGGAGATTGAAGCGTGTGTAGAGATTCAGAAGAAAATTCAGTGGATTAAGGAAGGCAAAATTGTTAATGACAAGTTTAGAGTGATTGATGGAAAGCTCTGGTACAAACGCAGATTGGTCATACCAAAGGATTCAGCCTCCATTCCACTACTGTTATCAGAATATCACGATGGTCAACAAGGAGGACACTCAGGAGTTCTAAAAACAGTTAAGCGGATTCAGTCGATGTTTCATTGGGAGGGTCTGTATCAGAGGGTGCAGAAGTATGTTTCTGAGTGTAACATTTGCCAAACTCACAAATATTCTACACTAGCACCAGCAGGATTGTTGCAGCCATTACCCATTCCGAATCGTATTTGGGAAGATGTGTCAATGGATTTCGTGGAAGGGCTTCCAGGTTCTCAAGGGGTTAATGTGATCATGGTGGTGGTTGATCGGCTTAGCAAATATGCTCACTTCGTTGGACTGAAACACCCGTTTACTGCGGTAGAGGTGGCTTCAAAATTCGTTTCTGAGGTTGTTAAGCATCATGGTTTTCCGCGTTCAATTGTCTCTGACAGAGATCGAGTGTTCTTGAGTTCGTTTTGGAAGGATTTGTTCAGAGCTTCGGGAACTAAACTCAAGTACAGCACAGCTTTTCACCCACAAACGGATGGCCAAACGGAAGTGTTAAACAGATGTATGGAGACGTATCTCAGGTGTTTTGCGTCCAGTCATCCAAGAACGTGGCACAAATTTTTATCTTGGGCTGAACTATGGTACAATACATCTTTTCATACAGCTTTGAAAGCTACTCCTTTTCAAGTGGTTTATGGTAGGGAGCCACCAGCTATTGTTCGTTTTGAAGAAGGTTCAACGAACAATTATGATTTGGAGATGGCTTTACGCGAACGTGATGCGATGTTGGTTCAGATTCAGCAGCATTTGCTGCGTGCTCAACATTTGATGAAAGCAAGTGCGGATAAGCATCGTAGAGAGTTGAGTTTTGCAGTAGGGGATTGGGTATATTTGAAGCTAAAACCATTCAGGCAACACACTGTGGTCCGTCGTTACTGTCAAAAGCTGGCAGCCAAATATTTTGGGCCTTATGAGATCAGTGAGCGCATTGGGAAGGTTGCTTATCGATTAAAGTTACCAGACGAGGCTCGTATTCATCCTGTGTTTCATATCTCGCAATTGAAGGCAGCGCTGGGACATGGACAGTTTGTGCAAGCCATTCCTCCTGTTTGTTCTGATTTGACTGATATGGTTCTGCAACCAGAGAACATCGTTGCATCACGAGTCACGGAGGCTGGCAAGGAAGAGTTGTTGGTGAAATGGAGGGATCGTTTGGATCATGACAATACGTGGATGTTGCTGGAGGAGTTTAGGCTGCAATTTCCGTCATACAAGCTTGAGGGCAAGCTTAATTTCAAAGGGGGGAGTATTGATAGGTATAAACATACTTATTCGAGAAGAAGGTGGAAAGGAGCTGAGCTGGCAAGTGAGAAGGGAGCTGAGGAGCTTAAGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MESYKLGNRVMASLPCHSPSASAIWKTDVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALTQLAAISGEDSRNWRDESKLIKKIVKDISDRLVSTSLDDTDELIGMSSHMDFLQSMMSIEEQDVRTVGIWGMGGVGKTTIAKYLYNKLSSRFQAHCFMENVKEVCNRYGVERLQGEFLCRMFRERDSVSCSSMIKERFRRKRVLIVLDDVDRSEQLDGLVKETGWFGPGSRIIVTTRDRHLLVSHGIELIYKVKCLPEKEALHLFCNYAFRNETIAPEFRVLAVQAVNYAFGLPLALRVLGSFLYRRGEREWESTLARLETSPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKHVDYATRLLDICGYAAEIGITVLTEKSLIVISNGCIKMHDLVEQMGRELVRRQAERFLLWRPEDICDLLSETTGTSVVEGMSLNMSEVSEVLASDQGFEGLSNLKLLNFYDLSYDGETRVHLPNGLTYLPRKLRYLRWDGYPLNSLPSRFHPEFLVELFMSNSHLHYLWNGIQPLRKLKKMDLSRCKYLIEIPDLSKATNLEELNLSYCQSLTEVTPSIKNLQKLYCFYLTNCTKLKKIPSGIALKSLETVGMNGCSSLMHFPEFSWNARRLYLSSTKIEELPSSMISRLSCLVELDMSDCQSIRTLPSSVKHLVSLKSLSLNGCKHLENLPDSLLSLTCLETLEVSGCLNINEFPRLAKNIEVLRISETSINEVPARICDLSQLRSLDISGNEKLKSLPVSISELRSLEKLKLSGCCVLESLPPEICQTMSCLRWLDLERTSIKELPENIGNLIALEVLQAGRTAIRRAPLSIARLERLQVLAIGNSFYTSQGLHSLCPHLSIFNDLRALCLSNMNMIEIPNSIGNLWSLSELDLSGNNFEHIPASIRRLTRLSRLDVNNCQRLQALPDDLPRRLLYIYAHGCTSLVSISGCFKPCCLRKLVASNCYKLDQEAQILIHRNMKLDAAKPEHSYFPGRDVPSCFNHQAMGSSLRIRQPSSDILGFSACIMIGVDGELIGINILIREEGGKELSWQSSSGEEKFTGEIVRMSKAKVGEPSPSRDETEEETDNELQDMDLEFLKGGYIRLNRARKEADARFEELNQRLGSILQILEKSNNRNDDRPHHDPRSSNPQVYHSNWERNPEERVLGYRSGDMNLANRESMLRKIEMPLFSGKQPYVWITEVERWFSIGKYDDTERLELVGLSLEGKVKKWFGWELKRRGFRDWREFKEKLVLRFAESIEEEPEIRLFSIKQTGSVSDYISEFEELSGLVKGLDDNLLIKIFYTGLNQEMKEVIRIKEPVGLENHIAAVLRMESSAFCKVVSEATKHDKIEHKQHQHNPLRSSSHYNSHRRYVDSENKFTRAGGSSSTTAQQKKESENSSSNESKVKKYTNEELDRMRKEFICFKCGAKGWTRAHKCPNKDVRVMTTLNGLQMEVVEDQEDDGEEFFFEAQMQELCTLSLNSYLGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETLGRCEVDWKEQELSFIHGGVKVTLFGDPSLHTSKLSMKSLSPISTKVVKGREELFTISSGVTSTDPMIPDKLLDVLAEFDQVFALPTALPPFRGKNHAINLKPGVTAISVRPYRYPHNTKVVMEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHIISKNGVATDAIKTQCMKEWPLPKSVKQLRGFLGLTGYYRHYVKGYGSIARPLTELLKKDGFQWSKEAELAFDSLKKAMVEAPVLALPNFEKPFVIESDASGFGVGAVLMQDGKPIAFFSHGLTEREQLKPAYERELMAVVLAVQKWKHYLLGRQFVVHTDHRSLKYLLEQKEVNMEYHRWLTKLLGFDFIIVYRPGCDNKAADGLSRIERNVVREMSSLLLALTIPAALQVEDIYKEIEACVEIQKKIQWIKEGKIVNDKFRVIDGKLWYKRRLVIPKDSASIPLLLSEYHDGQQGGHSGVLKTVKRIQSMFHWEGLYQRVQKYVSECNICQTHKYSTLAPAGLLQPLPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPFQVVYGREPPAIVRFEEGSTNNYDLEMALRERDAMLVQIQQHLLRAQHLMKASADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLPDEARIHPVFHISQLKAALGHGQFVQAIPPVCSDLTDMVLQPENIVASRVTEAGKEELLVKWRDRLDHDNTWMLLEEFRLQFPSYKLEGKLNFKGGSIDRYKHTYSRRRWKGAELASEKGAEELK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
15-165 | TIR Toll-Interleukin receptor
|
PCHSPSASAIWKTDVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALTQLAAISGE |
| ProfileScan: PS50104 IPR000157
|
25-180 | TIR Toll-Interleukin receptor
|
WKTDVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALTQLAAISGEDSRNWRDESKLIKKI |
| HMMSmart: SM00255 IPR000157
|
26-162 | TIR Toll-Interleukin receptor
|
KTDVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALTQLAAI |
| Gene3D: G3DSA:3.40.50.10140 | 28-158 | G3DSA:3.40.50.10140 | DVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALTQ |
| HMMPfam: PF01582 IPR000157
|
29-157 | TIR Toll-Interleukin receptor
|
VFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKHISSELVDTIRGSRFAVVVVSRNYASSSWCLDELLEIMERKNTVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKKKVMKWREALT |
| superfamily: SSF52540 | 182-423 | SSF52540 | KDISDRLVSTSLDDTDELIGMSSHMDFLQSMMSIEEQDVRTVGIWGMGGVGKTTIAKYLYNKLSSRFQAHCFMENVKEVCNRYGVERLQGEFLCRMFRERDSVSCSSMIKERFRRKRVLIVLDDVDRSEQLDGLVKETGWFGPGSRIIVTTRDRHLLVSHGIELIYKVKCLPEKEALHLFCNYAFRNETIAPEFRVLAVQAVNYAFGLPLALRVLGSFLYRRGEREWESTLARLETSPHSDI |
| HMMPfam: PF00931 IPR002182
|
205-454 | NB-ARC,NBS NB-ARC
|
HMDFLQSMMSIEEQDVRTVGIWGMGGVGKTTIAKYLYNKLSSRFQAHCFMENVKEVCNRYGVERLQGEFLCRMFRERDSVSCSSMIKERFRRKRVLIVLDDVDRSEQLDGLVKETGWFGPGSRIIVTTRDRHLLVSHGIELIYKVKCLPEKEALHLFCNYAFRNETIAPEFRVLAVQAVNYAFGLPLALRVLGSFLYRRGEREWESTLARLETSPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKHV |
| Gene3D: G3DSA:3.40.50.300 | 209-310 | G3DSA:3.40.50.300 | LQSMMSIEEQDVRTVGIWGMGGVGKTTIAKYLYNKLSSRFQAHCFMENVKEVCNRYGVERLQGEFLCRMFRERDSVSCSSMIKERFRRKRVLIVLDDVDRSE |
| FPrintScan: PR00364 IPR000767
|
222-237 | DISEASERSIST Disease resistance protein
|
TVGIWGMGGVGKTTIA |
| FPrintScan: PR00364 IPR000767
|
293-307 | DISEASERSIST Disease resistance protein
|
RFRRKRVLIVLDDVD |
| FPrintScan: PR00364 IPR000767
|
386-400 | DISEASERSIST Disease resistance protein
|
AFGLPLALRVLGSFL |
| superfamily: SSF46785 | 421-522 | SSF46785 | SDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKHVDYATRLLDICGYAAEIGITVLTEKSLIVISNGCIKMHDLVEQMGRELVRRQAERFLLWRPEDICDLLS |
| superfamily: SSF52058 | 520-869 | SSF52058,LRR | LLSETTGTSVVEGMSLNMSEVSEVLASDQGFEGLSNLKLLNFYDLSYDGETRVHLPNGLTYLPRKLRYLRWDGYPLNSLPSRFHPEFLVELFMSNSHLHYLWNGIQPLRKLKKMDLSRCKYLIEIPDLSKATNLEELNLSYCQSLTEVTPSIKNLQKLYCFYLTNCTKLKKIPSGIALKSLETVGMNGCSSLMHFPEFSWNARRLYLSSTKIEELPSSMISRLSCLVELDMSDCQSIRTLPSSVKHLVSLKSLSLNGCKHLENLPDSLLSLTCLETLEVSGCLNINEFPRLAKNIEVLRISETSINEVPARICDLSQLRSLDISGNEKLKSLPVSISELRSLEKLKLSGC |
| Gene3D: G3DSA:3.80.10.10 | 581-792 | G3DSA:3.80.10.10 | LPRKLRYLRWDGYPLNSLPSRFHPEFLVELFMSNSHLHYLWNGIQPLRKLKKMDLSRCKYLIEIPDLSKATNLEELNLSYCQSLTEVTPSIKNLQKLYCFYLTNCTKLKKIPSGIALKSLETVGMNGCSSLMHFPEFSWNARRLYLSSTKIEELPSSMISRLSCLVELDMSDCQSIRTLPSSVKHLVSLKSLSLNGCKHLENLPDSLLSLTC |
| FPrintScan: PR00364 IPR000767
|
625-641 | DISEASERSIST Disease resistance protein
|
QPLRKLKKMDLSRCKYL |
| ProfileScan: PS51450 | 629-651 | LRR,Leucine-rich repeat profile. | KLKKMDLSRCKYLIEIPDLSKAT |
| ProfileScan: PS51450 | 652-675 | LRR,Leucine-rich repeat profile. | NLEELNLSYCQSLTEVTPSIKNLQ |
| HMMPfam: PF00560 IPR001611
|
652-674 | LRR_1 Leucine-rich repeat
|
NLEELNLSYCQSLTEVTPSIKNL |
| ProfileScan: PS51450 | 720-741 | LRR,Leucine-rich repeat profile. | NARRLYLSSTKIEELPSSMISR |
| HMMPfam: PF13855 | 722-778 | LRR_8,Leucine rich repeat | RRLYLSSTKIEELPSSMISRLSCLVELDMSDCQSIRTLPSSVKHLVSLKSLSLNGCK |
| ProfileScan: PS51450 | 765-787 | LRR,Leucine-rich repeat profile. | HLVSLKSLSLNGCKHLENLPDSL |
| Gene3D: G3DSA:3.80.10.10 | 793-944 | G3DSA:3.80.10.10 | LETLEVSGCLNINEFPRLAKNIEVLRISETSINEVPARICDLSQLRSLDISGNEKLKSLPVSISELRSLEKLKLSGCCVLESLPPEICQTMSCLRWLDLERTSIKELPENIGNLIALEVLQAGRTAIRRAPLSIARLERLQVLAIGNSFYTS |
| superfamily: SSF52047 | 812-1071 | SSF52047,LRR | KNIEVLRISETSINEVPARICDLSQLRSLDISGNEKLKSLPVSISELRSLEKLKLSGCCVLESLPPEICQTMSCLRWLDLERTSIKELPENIGNLIALEVLQAGRTAIRRAPLSIARLERLQVLAIGNSFYTSQGLHSLCPHLSIFNDLRALCLSNMNMIEIPNSIGNLWSLSELDLSGNNFEHIPASIRRLTRLSRLDVNNCQRLQALPDDLPRRLLYIYAHGCTSLVSISGCFKPCCLRKLVASNCYKLDQEAQILIH |
| HMMPfam: PF13855 | 835-896 | LRR_8,Leucine rich repeat | SQLRSLDISGNEKLKSLPVSISELRSLEKLKLSGCCVLESLPPEICQTMSCLRWLDLERTSI |
| ProfileScan: PS51450 | 836-858 | LRR,Leucine-rich repeat profile. | QLRSLDISGNEKLKSLPVSISEL |
| ProfileScan: PS51450 | 860-882 | LRR,Leucine-rich repeat profile. | SLEKLKLSGCCVLESLPPEICQT |
| ProfileScan: PS51450 | 885-906 | LRR,Leucine-rich repeat profile. | CLRWLDLERTSIKELPENIGNL |
| Gene3D: G3DSA:3.80.10.10 | 950-1059 | G3DSA:3.80.10.10 | LCPHLSIFNDLRALCLSNMNMIEIPNSIGNLWSLSELDLSGNNFEHIPASIRRLTRLSRLDVNNCQRLQALPDDLPRRLLYIYAHGCTSLVSISGCFKPCCLRKLVASNC |
| ProfileScan: PS51450 | 959-980 | LRR,Leucine-rich repeat profile. | DLRALCLSNMNMIEIPNSIGNL |
| ProfileScan: PS51450 | 982-1003 | LRR,Leucine-rich repeat profile. | SLSELDLSGNNFEHIPASIRRL |
| HMMPfam: PF00560 IPR001611
|
982-1002 | LRR_1 Leucine-rich repeat
|
SLSELDLSGNNFEHIPASIRR |
| HMMPanther: PTHR10178:SF14 | 1254-2652 | PTHR10178:SF14,RETROVIRUS POLYPROTEIN | NPEERVLGYRSGDMNLANRESMLRKIEMPLFSGKQPYVWITEVERWFSIGKYDDTERLELVGLSLEGKVKKWFGWELKRRGFRDWREFKEKLVLRFAESIEEEPEIRLFSIKQTGSVSDYISEFEELSGLVKGLDDNLLIKIFYTGLNQEMKEVIRIKEPVGLENHIAAVLRMESSAFCKVVSEATKHDKIEHKQHQHNPLRSSSHYNSHRRYVDSENKFTRAGGSSSTTAQQKKESENSSSNESKVKKYTNEELDRMRKEFICFKCGAKGWTRAHKCPNKDVRVMTTLNGLQMEVVEDQEDDGEEFFFEAQMQELCTLSLNSYLGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETLGRCEVDWKEQELSFIHGGVKVTLFGDPSLHTSKLSMKSLSPISTKVVKGREELFTISSGVTSTDPMIPDKLLDVLAEFDQVFALPTALPPFRGKNHAINLKPGVTAISVRPYRYPHNTKVVMEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHIISKNGVATDAIKTQCMKEWPLPKSVKQLRGFLGLTGYYRHYVKGYGSIARPLTELLKKDGFQWSKEAELAFDSLKKAMVEAPVLALPNFEKPFVIESDASGFGVGAVLMQDGKPIAFFSHGLTEREQLKPAYERELMAVVLAVQKWKHYLLGRQFVVHTDHRSLKYLLEQKEVNMEYHRWLTKLLGFDFIIVYRPGCDNKAADGLSRIERNVVREMSSLLLALTIPAALQVEDIYKEIEACVEIQKKIQWIKEGKIVNDKFRVIDGKLWYKRRLVIPKDSASIPLLLSEYHDGQQGGHSGVLKTVKRIQSMFHWEGLYQRVQKYVSECNICQTHKYSTLAPAGLLQPLPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPFQVVYGREPPAIVRFEEGSTNNYDLEMALRERDAMLVQIQQHLLRAQHLMKASADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLPDEARIHPVFHISQLKAALGHGQFVQAIPPVCSDLTDMVLQPENIVASRVT |
| HMMPanther: PTHR10178 | 1254-2652 | PTHR10178,GAG/POL/ENV POLYPROTEIN | NPEERVLGYRSGDMNLANRESMLRKIEMPLFSGKQPYVWITEVERWFSIGKYDDTERLELVGLSLEGKVKKWFGWELKRRGFRDWREFKEKLVLRFAESIEEEPEIRLFSIKQTGSVSDYISEFEELSGLVKGLDDNLLIKIFYTGLNQEMKEVIRIKEPVGLENHIAAVLRMESSAFCKVVSEATKHDKIEHKQHQHNPLRSSSHYNSHRRYVDSENKFTRAGGSSSTTAQQKKESENSSSNESKVKKYTNEELDRMRKEFICFKCGAKGWTRAHKCPNKDVRVMTTLNGLQMEVVEDQEDDGEEFFFEAQMQELCTLSLNSYLGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETLGRCEVDWKEQELSFIHGGVKVTLFGDPSLHTSKLSMKSLSPISTKVVKGREELFTISSGVTSTDPMIPDKLLDVLAEFDQVFALPTALPPFRGKNHAINLKPGVTAISVRPYRYPHNTKVVMEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHIISKNGVATDAIKTQCMKEWPLPKSVKQLRGFLGLTGYYRHYVKGYGSIARPLTELLKKDGFQWSKEAELAFDSLKKAMVEAPVLALPNFEKPFVIESDASGFGVGAVLMQDGKPIAFFSHGLTEREQLKPAYERELMAVVLAVQKWKHYLLGRQFVVHTDHRSLKYLLEQKEVNMEYHRWLTKLLGFDFIIVYRPGCDNKAADGLSRIERNVVREMSSLLLALTIPAALQVEDIYKEIEACVEIQKKIQWIKEGKIVNDKFRVIDGKLWYKRRLVIPKDSASIPLLLSEYHDGQQGGHSGVLKTVKRIQSMFHWEGLYQRVQKYVSECNICQTHKYSTLAPAGLLQPLPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPFQVVYGREPPAIVRFEEGSTNNYDLEMALRERDAMLVQIQQHLLRAQHLMKASADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLPDEARIHPVFHISQLKAALGHGQFVQAIPPVCSDLTDMVLQPENIVASRVT |
| HMMPfam: PF03732 IPR005162
|
1315-1402 | Retrotrans_gag Retrotransposon gag protein
|
GLSLEGKVKKWFGWELKRRGFRDWREFKEKLVLRFAESIEEEPEIRLFSIKQTGSVSDYISEFEELSGLVKGLDDNLLIKIFYTGLNQ |
| superfamily: SSF50630 IPR021109
|
1578-1683 | Pept_Aspartic Peptidase aspartic
|
LGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETLGRC |
| HMMPfam: PF08284 IPR013242
|
1593-1680 | RVP_2 Retroviral aspartyl protease
|
QKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETL |
| PatternScan: PS00141 IPR001969
|
1599-1610 | ASP_PROTEASE Peptidase aspartic, active site
|
VMLDSGASHNFI |
| superfamily: SSF56672 | 1753-2182 | SSF56672 | DVLAEFDQVFALPTALPPFRGKNHAINLKPGVTAISVRPYRYPHNTKVVMEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHIISKNGVATDAIKTQCMKEWPLPKSVKQLRGFLGLTGYYRHYVKGYGSIARPLTELLKKDGFQWSKEAELAFDSLKKAMVEAPVLALPNFEKPFVIESDASGFGVGAVLMQDGKPIAFFSHGLTEREQLKPAYERELMAVVLAVQKWKHYLLGRQFVVHTDHRSLKYLLEQKEVNMEYHRWLTKLLGFDFIIVYR |
| Gene3D: G3DSA:3.10.10.10 | 1776-1914 | G3DSA:3.10.10.10 | HAINLKPGVTAISVRPYRYPHNTKVVMEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTN |
| ProfileScan: PS50878 IPR000477
|
1810-1989 | RT_POL Reverse transcriptase
|
LEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHII |
| HMMPfam: PF00078 IPR000477
|
1829-1989 | RVT_1 Reverse transcriptase
|
VKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQLLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHII |
| Gene3D: G3DSA:3.30.70.270 | 1916-1995 | G3DSA:3.30.70.270 | PATFQALMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQIEYLGHIISKNGVA |
| ProfileScan: PS50994 IPR001584
|
2333-2497 | INTEGRASE Integrase, catalytic core
|
LQPLPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPFQVVYGRE |
| superfamily: SSF53098 IPR012337
|
2335-2503 | RNaseH_fold Ribonuclease H-like
|
PLPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPFQVVYGREPPAIVR |
| Gene3D: G3DSA:3.30.420.10 | 2336-2490 | G3DSA:3.30.420.10 | LPIPNRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMETYLRCFASSHPRTWHKFLSWAELWYNTSFHTALKATPF |
| HMMPfam: PF00665 IPR001584
|
2340-2453 | rve Integrase, catalytic core
|
NRIWEDVSMDFVEGLPGSQGVNVIMVVVDRLSKYAHFVGLKHPFTAVEVASKFVSEVVKHHGFPRSIVSDRDRVFLSSFWKDLFRASGTKLKYSTAFHPQTDGQTEVLNRCMET |
| superfamily: SSF54160 IPR016197
|
2604-2680 | Chromodomain-like Chromo domain-like
|
EARIHPVFHISQLKAALGHGQFVQAIPPVCSDLTDMVLQPENIVASRVTEAGKEELLVKWRDRLDHDNTWMLLEEFR |
| Gene3D: G3DSA:2.40.50.40 | 2639-2677 | G3DSA:2.40.50.40 | MVLQPENIVASRVTEAGKEELLVKWRDRLDHDNTWMLLE |
| HMMSmart: SM00298 IPR000953
|
2640-2691 | CHROMO Chromo domain
|
VLQPENIVASRVTEAGKEELLVKWRDRLDHDNTWMLLEEFRLQFPSYKLEGK |
| ProfileScan: PS50013 IPR000953
|
2641-2673 | CHROMO_2 Chromo domain
|
LQPENIVASRVTEAGKEELLVKWRDRLDHDNTW |
| HMMPfam: PF00385 IPR000953
|
2642-2685 | Chromo Chromo domain
|
QPENIVASRVTEAGKEELLVKWRDRLDHDNTWMLLEEFRLQFPS |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
