PRGDB00062349 (NBS-LRR-like protein)

NBS-LRR-like protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	307829320 (HQ214676)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Pennisetum glaucum
	Comment?

Pennisetum glaucum clone RGPM 213 NBS-LRR-like protein mRNA, complete cds.

DNA Sequence

ATGGCAACAATAATTGATTCTGTGGTTGGATCGCTTGCCAAAAAGTTGCAAGATATTATTTTTGAGGAAGCCATTTCAGTTCTGGGGGTAAAACGAGACCTCAAAGATCTAGAGAGAACAATGAACCATATACAATGCTTTCTGAAAGATGCAGAGCAAAGGAGGGCAGAAGAGTCAGCAGTTAACAATTGGCTTGGTGAGCTGGAAGATGCTATGTACGAAGCTGATGATATCATTGACTTGGCTACATTAGAAGGGCATAAGCTTCTAGCAGACCACGCATCACCATCAAGAAGGTCTGCTGAATGTTCAAGATTTCCACTTTTCACATGCCTTCCCACTATTCGAAGGCGTCACGAGATTGCCATTCGCATCAGGAAATTGAATACTGAATTAGAGAATGTTTTAAAACTAGGTGAAAGATTGTTAAAGCTTCAGAATGTGCAGCCTAAAGGTGAAGTTTCATTAGTGCATAGGATGAAAGCTTCTGACCTAGTGGAACCTAACCTTGTGGGAAAGGAAACCCATGTTGCTTGTAAAAGATTGGTTGGACTGATTCTTGCACACAGAGAAAAGAAGACATACAAGATTGGCATTGTTGGAACCGGAGGTGTTGGTAAAACGACTTTGGCCCAGAAAATATATAATAGCAACAAAATAAAAGGAACTTTTAGCAAACAAGCATGGATTTGTGTTTCCCAACAATACTCTGAAGACACTCTTTTGAAAGAGGTTCTACGAAACATTGGGGAAGATTATAGGCAAGATGAATCTGTTGGAGAACTCACCAAAAAGCTATCAATTGCTGTTGAAAATAAAACTTTATTTCTTGTGTTGGATGACATGTGGAAGCATGAGGCATGGACTAATCTACTAAGAACTCCACTAAACACTGCAACAACAACAATAATTCTTGTGACTACTCGTAACGATACAGTTGCACGAGCAATTGGTGTGGAAGATGTGCATCGAGTTGAATTGATGTCTGATGATGTAGGATGGGAGCTTCTTTGGAAGAGTATGAACATTAATGAAGAGGCTGAAGTACAAAACCTAAGGAGTATAGGGAAGGATATTGTCCGTATGTGTGGTGGCCTCCCCCTAGCCCTCAAGGTTACAGCTAGTGTTCTCGCATGCAAGGAGAAAACTGAGAATCAATGGCGGCAAATTCTAAAAAATAGTGCTTGGTCCATGAGCAAAGTTCCTATTGAGCTGAGAGGAGCACTATACTTGAGCTATGATGACCTACCATGGCACTTGAGACAATGTTTCCTCTTCTGCACCTTATATCCCGAAGATCATAGCATGTCTCAAAATGATCTTATAAGGTATTGGATTGCTGAAGGTTTTATACAAAAGCAAGAAGACCAACTTCTTGAGGATACAGCTAACGAATATTACAACGAATTGGTATATAGGAATCTCCTTCATCCAGACCCTGCTTATGCTGATTATTCTTGGTGTAAAATGCATGATCTTTTAAGAAGACTGGGTCAACATTTGTCCGAAGATGAATATTTTTGTGGAGATTTACATTCATTGGAAGCTAAGTCTTTATTAAAACTACGGCACATTTCAGTTTGTATAGATAAAGATTCCATAACTCTGCCCATTATGACCGGAGAGCATATCCGAGCACGAACATTACTCATCATCTGTACCAAGTCAGTAAGACTGGAAAATTCAATATTTACAAGGCTTTCGTGCGTAAGAGTTTTGGATTTGACTGATTCAATTATAGGAAAAGTTCCTGATTGCATTGGTACTTTAGTCCATCTAAGATTACTTGATCTTGATGGGACTGGCATATCCAATCTCCCTCAATCTATCGGTTCTCTCAAATACCTACAAATATTAAATTTGCAGTGGTGCCATTTTTTGCACAACCTTCCTTTGGCAATCACAAAATTGTGTAACTTGAGACGCTTGGGTCTTGATGGGACACCAATAAATCAAGTTCCAAAAGGGATAAGTGAGTTGAAGTATCTCAACGATTTACAAGGATTTCCAATTGGTGGTGGCAGTGATAATAGAGCTAGAATGCAAGATGGATGGAACCTAGACGAGCTATGTCATCTTTTGCAGTTGTGGAAGCTTGATATGATAAAGTTGGAAAGAGCATCTCCTTGTAGTATGGATTCATTGTTAGTAGACAAAAAGTTTCTCAAAAAAATAAATTTATTTTGTACTGTACGCATAGATGAGCCGTGTAGTGAAAAGGATGTAAACAATATTGAGAGGACTTTTGAGAAGCTAATCCCTCCACAGAGCATTGAAGATATAGGGTATTGGTTATTTCTTTGGTCGGAGGTTTCCCACCTGGCTTGGCACAACTAG

Protein sequences

Name	Description	Sequence
NBS-LRR-like protein	NBS-LRR-like protein [Pennisetum glaucum].	MATIIDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDLQGFPIGGGSDNRARMQDGWNLDELCHLLQLWKLDMIKLERASPCSMDSLLVDKKFLKKINLFCTVRIDEPCSEKDVNNIERTFEKLIPPQSIEDIGYWLFLWSEVSHLAWHN
NBS-LRR-like protein	NBS-LRR-like protein [Pennisetum glaucum].	MATIIDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDLQGFPIGGGSDNRARMQDGWNLDELCHLLQLWKLDMIKLERASPCSMDSLLVDKKFLKKINLFCTVRIDEPCSEKDVNNIERTFEKLIPPQSIEDIGYWLFLWSEVSHLAWHN

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	5-666	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	IDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
HMMPanther: PTHR23155:SF230	5-666	PTHR23155:SF230,OS11G0674500 PROTEIN	IDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
HMMPanther: PTHR23155	5-666	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	IDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
HMMPanther: PTHR23155:SF230	5-666	PTHR23155:SF230,OS11G0674500 PROTEIN	IDSVVGSLAKKLQDIIFEEAISVLGVKRDLKDLERTMNHIQCFLKDAEQRRAEESAVNNWLGELEDAMYEADDIIDLATLEGHKLLADHASPSRRSAECSRFPLFTCLPTIRRRHEIAIRIRKLNTELENVLKLGERLLKLQNVQPKGEVSLVHRMKASDLVEPNLVGKETHVACKRLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQEDQLLEDTANEYYNELVYRNLLHPDPAYADYSWCKMHDLLRRLGQHLSEDEYFCGDLHSLEAKSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
Gene3D: G3DSA:3.40.50.300	181-314	G3DSA:3.40.50.300	RLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVA
Gene3D: G3DSA:3.40.50.300	181-314	G3DSA:3.40.50.300	RLVGLILAHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVA
HMMPfam: PF00931 IPR002182	188-454	NB-ARC,NBS NB-ARC	AHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQ
HMMPfam: PF00931 IPR002182	188-454	NB-ARC,NBS NB-ARC	AHREKKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSKVPIELRGALYLSYDDLPWHLRQCFLFCTLYPEDHSMSQNDLIRYWIAEGFIQKQ
superfamily: SSF52540	192-400	SSF52540	KKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSK
superfamily: SSF52540	192-400	SSF52540	KKTYKIGIVGTGGVGKTTLAQKIYNSNKIKGTFSKQAWICVSQQYSEDTLLKEVLRNIGEDYRQDESVGELTKKLSIAVENKTLFLVLDDMWKHEAWTNLLRTPLNTATTTIILVTTRNDTVARAIGVEDVHRVELMSDDVGWELLWKSMNINEEAEVQNLRSIGKDIVRMCGGLPLALKVTASVLACKEKTENQWRQILKNSAWSMSK
FPrintScan: PR00364 IPR000767	196-211	DISEASERSIST Disease resistance protein	KIGIVGTGGVGKTTLA
FPrintScan: PR00364 IPR000767	196-211	DISEASERSIST Disease resistance protein	KIGIVGTGGVGKTTLA
FPrintScan: PR00364 IPR000767	269-283	DISEASERSIST Disease resistance protein	AVENKTLFLVLDDMW
FPrintScan: PR00364 IPR000767	269-283	DISEASERSIST Disease resistance protein	AVENKTLFLVLDDMW
FPrintScan: PR00364 IPR000767	363-377	DISEASERSIST Disease resistance protein	CGGLPLALKVTASVL
FPrintScan: PR00364 IPR000767	363-377	DISEASERSIST Disease resistance protein	CGGLPLALKVTASVL
superfamily: SSF52058	517-666	SSF52058,LRR	KSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
superfamily: SSF52058	517-666	SSF52058,LRR	KSLLKLRHISVCIDKDSITLPIMTGEHIRARTLLIICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
Gene3D: G3DSA:3.80.10.10	551-666	G3DSA:3.80.10.10	IICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
Gene3D: G3DSA:3.80.10.10	551-666	G3DSA:3.80.10.10	IICTKSVRLENSIFTRLSCVRVLDLTDSIIGKVPDCIGTLVHLRLLDLDGTGISNLPQSIGSLKYLQILNLQWCHFLHNLPLAITKLCNLRRLGLDGTPINQVPKGISELKYLNDL
FPrintScan: PR00364 IPR000767	611-627	DISEASERSIST Disease resistance protein	GSLKYLQILNLQWCHFL
FPrintScan: PR00364 IPR000767	611-627	DISEASERSIST Disease resistance protein	GSLKYLQILNLQWCHFL

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show