PRGDB00063268 (hypothetical protein)
hypothetical protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 297819253 (XM_002877464) |
Gene Class | CNL |
Domain Type | NBS, LRR, Others |
Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
ATGGTCGATGCGATTGCGGGATTTCTTGTGGGAAAGATCGGCAACTATATCATTGAAGAAGCATCAATGTTGATGGCAGTCAAAGACGATCTAGAGGTGCTGAAGACAGAGTTGACGTGCATCCAAGGTTATCTCAAGGATGTTCAAGCACGAGATAGAGAAGACGAGGTCTCAAAAGAGTGGACAAAACTGGTTTTAGATATCGCTTATGACATTGAGGATGTTTTGGACACCTATCACATGAAACTCGAAGAAAGATCACAAAGGCAAGGCTTCAAGAGATGGGCCAACAAATTAGGCAGGAAAATGGATTCGTCTAGCATAGTTGATGATATCAGAACCCTCAAGGGAAGAATCCTAGATGTTACTCGCAAGCGGAAGACTTATGGAATAGGAAACTTGAACGAGCCTCGAGGAGGAGAGAATAATTTAAGTTCATGGGTAAGGGAGCTTCCGCATGCTCGATTTGTTGATCAAGAAGAGCTTATAGTTGGTTTGGAAGATGATGCTAAGATTCTTTTGGAAAAGATTCTTGATTATAAAGAGAACAAGAGATATATCATCTCCATATTCGGCATGGGAGGTCTTGGAAAGACGGCTCTTGCTAGAAAGCTTTCTAACTCTTGTGATGTGAAGAATAATTTTGAATACCGCGCATGGACTTATGTTTCTCAAGAGTATAAAACCAAAGATATGCTTATGGGAATCATAAGTTCTTTGGGAGTAATTTCTGGGGAAGAATTGGAAAAGATCAGGATGTTTGCGGCAGAGGACTTAGAAGTTTACCTTCACAGTCTTCTAGAAGGGAAAAAATATTTGGTGGTGGTAGATGATATATGGGAGATAGAAGCGTGGGAGAGCCTGAAGAGAGCTTTACCAGAGAATCATAGAGGAAGTAGAGTCATCATCACTACGCGTATCAAAGCCGTGGCTGAAGGCATGGACGAGAGAGTCTATGCTCACAACTTAAGGTTTCTGACATTTGAAGAAAGCTGGAAATTGTTTGAAAAGAAAGCATTCAGGAATAGGCAATGGGTCGATGAAGATCTTCAGAAGATTGGGAAAGAAATGATTAAAAAATGTGGTGGCTTACCGCTTGCTATAGTTGTTCTTGGTGGGTTTCTGTCTAGGAAAAGACCAAGAGACTGGAATGAGGCGTGTGGCAATCTCTGGCGACGCCTAAAGGATAATTCCAATCATTTCTCCACTGTATTTGATCTAAGCTTCAAGGAGCTACGACATGAGTTGAAACTGTGCTTTCTTTACCTTAGTATCTTCCCAGAAGACTATGAGATTAACGTAGAGAAGTTGATACGGTTACTTGTGGCAGAAGGGTTTATAGAAGAGGATAAAGAGATGATGGAAGATGTGGCTCGGTATTATATTGAAGAGTTGATAGACAGAAGTCTGGTGAAAGCTGAAAGAATAGAGAGAGGGAAGGTAATTACTTGTAAAGTCCATGATCTTCTGAGAGACGTGGCTATCAAGAAAGCCAAAGAAAGAGAAGTGGTTCACCATCAGATCAATAGATACTTATCTGAGAAACACCGGAACAAGCGGATGCGATCCTTCTTATTCTTTGGAGAATCAGAGGATTTGGTAGGGCGTGATTTCGAAACCATTTACTTAAAACTGAAGCTACTTCGAGTGCTTGATCTCGGAGGGGTTCGGTTTCCTTGTGAAGAAGGGAAGAAGAGTTTACCAGAAGTGATTGGGGATCTGATCCAATTGAGGTACCTTGGAATTGCTGATACTTTTCTCAGCAATTTACCATCTTTTATCTCCAACTTACGGTTTCTACAAACACTAGATGCATCTGGCAATGAATCCATCAGGCAAACAATTGATCTCCGTAACCTCACATCACTGAGACATGTCATAGGAAAATTCGTTGGAGAATTACTACTAGGCGACACCGTTAACCTTCAGACCTTGAGGTCTATCTCCTCCTATAGCTGGAGCAAACTAAACCATGAGGTTTTCATAAATCTTCGGGACTTGGAAATCTTTGATTCCATGTGGGTGGATCAGAGAGGAATTTCTTTGGACTTGGCTTCCTTCTCTAAACGGAAGAATCTTCGTGCCTTGACGCTGAAGGTATCCACCTTCAAGTTATCTTCAGAATCGGAAGAAACAGTTCGGTTCCAAACCCTTGTTGAGCTGACACTGCGTTGCGATATAAGGAGACTTCCCAAGGACATGGATGTGATATTTCCTAGTCTTGAGTCACTTACACTTGTCGGATCATGA
Protein sequences
Name | Description | Sequence |
---|---|---|
hypothetical protein | hypothetical protein ARALYDRAFT_905877 [Arabidopsis lyrata subsp. lyrata]. | MVDAIAGFLVGKIGNYIIEEASMLMAVKDDLEVLKTELTCIQGYLKDVQARDREDEVSKEWTKLVLDIAYDIEDVLDTYHMKLEERSQRQGFKRWANKLGRKMDSSSIVDDIRTLKGRILDVTRKRKTYGIGNLNEPRGGENNLSSWVRELPHARFVDQEELIVGLEDDAKILLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITTRIKAVAEGMDERVYAHNLRFLTFEESWKLFEKKAFRNRQWVDEDLQKIGKEMIKKCGGLPLAIVVLGGFLSRKRPRDWNEACGNLWRRLKDNSNHFSTVFDLSFKELRHELKLCFLYLSIFPEDYEINVEKLIRLLVAEGFIEEDKEMMEDVARYYIEELIDRSLVKAERIERGKVITCKVHDLLRDVAIKKAKEREVVHHQINRYLSEKHRNKRMRSFLFFGESEDLVGRDFETIYLKLKLLRVLDLGGVRFPCEEGKKSLPEVIGDLIQLRYLGIADTFLSNLPSFISNLRFLQTLDASGNESIRQTIDLRNLTSLRHVIGKFVGELLLGDTVNLQTLRSISSYSWSKLNHEVFINLRDLEIFDSMWVDQRGISLDLASFSKRKNLRALTLKVSTFKLSSESEETVRFQTLVELTLRCDIRRLPKDMDVIFPSLESLTLVGS |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR11017:SF14 | 13-747 | PTHR11017:SF14 | IGNYIIEEASMLMAVKDDLEVLKTELTCIQGYLKDVQARDREDEVSKEWTKLVLDIAYDIEDVLDTYHMKLEERSQRQGFKRWANKLGRKMDSSSIVDDIRTLKGRILDVTRKRKTYGIGNLNEPRGGENNLSSWVRELPHARFVDQEELIVGLEDDAKILLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITTRIKAVAEGMDERVYAHNLRFLTFEESWKLFEKKAFRNRQWVDEDLQKIGKEMIKKCGGLPLAIVVLGGFLSRKRPRDWNEACGNLWRRLKDNSNHFSTVFDLSFKELRHELKLCFLYLSIFPEDYEINVEKLIRLLVAEGFIEEDKEMMEDVARYYIEELIDRSLVKAERIERGKVITCKVHDLLRDVAIKKAKEREVVHHQINRYLSEKHRNKRMRSFLFFGESEDLVGRDFETIYLKLKLLRVLDLGGVRFPCEEGKKSLPEVIGDLIQLRYLGIADTFLSNLPSFISNLRFLQTLDASGNESIRQTIDLRNLTSLRHVIGKFVGELLLGDTVNLQTLRSISSYSWSKLNHEVFINLRDLEIFDSMWVDQRGISLDLASFSKRKNLRALTLKVSTFKLSSESEETVRFQTLVELTLRCDIRRLPKDMDVIFPSLESLTLV |
HMMPanther: PTHR11017 | 13-747 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | IGNYIIEEASMLMAVKDDLEVLKTELTCIQGYLKDVQARDREDEVSKEWTKLVLDIAYDIEDVLDTYHMKLEERSQRQGFKRWANKLGRKMDSSSIVDDIRTLKGRILDVTRKRKTYGIGNLNEPRGGENNLSSWVRELPHARFVDQEELIVGLEDDAKILLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITTRIKAVAEGMDERVYAHNLRFLTFEESWKLFEKKAFRNRQWVDEDLQKIGKEMIKKCGGLPLAIVVLGGFLSRKRPRDWNEACGNLWRRLKDNSNHFSTVFDLSFKELRHELKLCFLYLSIFPEDYEINVEKLIRLLVAEGFIEEDKEMMEDVARYYIEELIDRSLVKAERIERGKVITCKVHDLLRDVAIKKAKEREVVHHQINRYLSEKHRNKRMRSFLFFGESEDLVGRDFETIYLKLKLLRVLDLGGVRFPCEEGKKSLPEVIGDLIQLRYLGIADTFLSNLPSFISNLRFLQTLDASGNESIRQTIDLRNLTSLRHVIGKFVGELLLGDTVNLQTLRSISSYSWSKLNHEVFINLRDLEIFDSMWVDQRGISLDLASFSKRKNLRALTLKVSTFKLSSESEETVRFQTLVELTLRCDIRRLPKDMDVIFPSLESLTLV |
superfamily: SSF52540 | 145-397 | SSF52540 | SSWVRELPHARFVDQEELIVGLEDDAKILLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITTRIKAVAEGMDERVYAHNLRFLTFEESWKLFEKKAFRNRQWVDEDLQKIGKEMIKKCGGLPLAIVVLGGFLSRKRPRDWNEACGNLWRRLKDN |
Gene3D: G3DSA:3.40.50.300 | 164-305 | G3DSA:3.40.50.300 | VGLEDDAKILLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITT |
HMMPfam: PF00931 IPR002182
|
173-450 | NB-ARC,NBS NB-ARC
|
LLEKILDYKENKRYIISIFGMGGLGKTALARKLSNSCDVKNNFEYRAWTYVSQEYKTKDMLMGIISSLGVISGEELEKIRMFAAEDLEVYLHSLLEGKKYLVVVDDIWEIEAWESLKRALPENHRGSRVIITTRIKAVAEGMDERVYAHNLRFLTFEESWKLFEKKAFRNRQWVDEDLQKIGKEMIKKCGGLPLAIVVLGGFLSRKRPRDWNEACGNLWRRLKDNSNHFSTVFDLSFKELRHELKLCFLYLSIFPEDYEINVEKLIRLLVAEGFIEED |
FPrintScan: PR00364 IPR000767
|
187-202 | DISEASERSIST Disease resistance protein
|
IISIFGMGGLGKTALA |
FPrintScan: PR00364 IPR000767
|
266-280 | DISEASERSIST Disease resistance protein
|
LLEGKKYLVVVDDIW |
FPrintScan: PR00364 IPR000767
|
361-375 | DISEASERSIST Disease resistance protein
|
CGGLPLAIVVLGGFL |
superfamily: SSF52058 | 485-746 | SSF52058,LRR | KVHDLLRDVAIKKAKEREVVHHQINRYLSEKHRNKRMRSFLFFGESEDLVGRDFETIYLKLKLLRVLDLGGVRFPCEEGKKSLPEVIGDLIQLRYLGIADTFLSNLPSFISNLRFLQTLDASGNESIRQTIDLRNLTSLRHVIGKFVGELLLGDTVNLQTLRSISSYSWSKLNHEVFINLRDLEIFDSMWVDQRGISLDLASFSKRKNLRALTLKVSTFKLSSESEETVRFQTLVELTLRCDIRRLPKDMDVIFPSLESLTL |
Gene3D: G3DSA:3.80.10.10 | 519-724 | G3DSA:3.80.10.10 | KRMRSFLFFGESEDLVGRDFETIYLKLKLLRVLDLGGVRFPCEEGKKSLPEVIGDLIQLRYLGIADTFLSNLPSFISNLRFLQTLDASGNESIRQTIDLRNLTSLRHVIGKFVGELLLGDTVNLQTLRSISSYSWSKLNHEVFINLRDLEIFDSMWVDQRGISLDLASFSKRKNLRALTLKVSTFKLSSESEETVRFQTLVELTLR |
FPrintScan: PR00364 IPR000767
|
595-611 | DISEASERSIST Disease resistance protein
|
SNLRFLQTLDASGNESI |
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