PRGDB00063862 (resistance gene candidate NBS-type protein)
| resistance gene candidate NBS-type protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 165967913 (EU239821) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Musa acuminata subsp. malaccensis |
DNA Sequence
ATGTGCGATCTCGTCTCCCTTGCATGCCAAGCCTCACAACCTTTATGCACAGCCTGCCTGATTCCTGTACATGATGAGATTAAGGAAACTTTGACCGCGTGCTTTCAACTCCGCCGGAACCGGAGCTCTCTCACGGAAGCGCTAAGCGACCTACGGGCCACCGCACAGAAAGTGAAGGACAAGGTCGAGGAAGAGGAGGCTCACCAGCGGATCTGCAATCCTGATGTCAGACGGTGGCAGAAGAAGGTCGAGGAGATACTCCGGGAATGCGACGCCGACCAGGAGCACGAGGAACCAAAGAGATGCGCCTGCCTGTGTGGCTGCGACATGGATCTGCTCCACCGTCGCCGAGTCGCCAGGAAAGTCGTCCAGAATCTGCAGGACGTGAACAAGCTGAAGTCAGATGGCGATGCATTCACTCCCCCCTTCACCCACGAGCCGCCACCGGAGCCGGTGGAGGAACTGCCGTTTGAAACGCAGACCATCGGGATGGAGTCGGCCCTAAGCCAGCTCCTATCCCGGTTTGACGACGCGGAGAAGAGCATCATCGGCGTCCACGGGCTAGGGGGCATGGGCAAGACGACGCTCCTCAAAACGCTCAACAACGAGCTCAAGGAGAATACCCGCGATTACCATGTGGTGATCATGATCGAGGTTGCCAACTCCGAGACGCTCAACGTGGTCGATATGCAGAAGATCATCGCCAATCGGCTGGGTCTGCCGTGGAACGAGAGCGAGACGGAGAGGGAGCGATCCACATTTCTGCGCAGGGCCCTGAGGAGGAAGAAGTTCGTTGTCCTGCTCGACGACGTCTGGAAAAAGTTCCAGTTGGCGGACGTGGGAATCCCCACGCCAAGCTCCGACAACGGGTGGAAGCTGATCCTCGCCTCGCGGTCGAACCAGGTGTGCGTCGAGATGGGCGACAAGGAGCCCATGGAGATGCCCTGCTTGGGCGACAATGAATCGCTGAGGTTGTTCCGGAGCAACTTGATGGCCGAGGTCAGTGCCGCCATCGACCATGACAGCGACATGAGAAGAAGCGCCATGGATATCATACAGAGCTGCGGCGGCCTTCCACTAGCA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| resistance gene candidate NBS-type protein | resistance gene candidate NBS-type protein [Musa acuminata subsp. malaccensis]. | MCDLVSLACQASQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF108 | 12-353 | PTHR23155:SF108,SUBFAMILY NOT NAMED | SQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQ |
| HMMPanther: PTHR23155 | 12-353 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | SQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQ |
| superfamily: SSF52540 | 144-361 | SSF52540 | THEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA |
| HMMPfam: PF00931 IPR002182
|
169-361 | NB-ARC,NBS NB-ARC
|
SQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA |
| Gene3D: G3DSA:3.40.50.300 | 174-272 | G3DSA:3.40.50.300 | RFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVW |
| FPrintScan: PR00364 IPR000767
|
182-197 | DISEASERSIST Disease resistance protein
|
IIGVHGLGGMGKTTLL |
| FPrintScan: PR00364 IPR000767
|
258-272 | DISEASERSIST Disease resistance protein
|
ALRRKKFVVLLDDVW |
| FPrintScan: PR00364 IPR000767
|
355-361 | DISEASERSIST Disease resistance protein
|
CGGLPLA |
List of Contributions
There has not been any contribution yet.
