PRGDB00063908 (Zm.2157)
| Zm.2157 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 195607479 (EU953452) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
GTGACACGGGAAAGGAGTACCGGAGACATCGTCAACGCCATGGCCGGAGGAGGTGCAACGGTGTGCGTGACCGGAGCCGGCGGGTTCATCGCCTCGTGGGTAGTGAAGCTCCTGCTCTCCCGCGGGTACACCGTGCACGGCACCGTCCGCCACCTCAGTGACGAGAAGACAGGCCACCTGAAGCGCCTGGAGAATGCTGCCGGAAACCTTAGGATCTTCAAGGCTGACCTGCTGGACTACGACGCCATGGCAGCTGCGGTCGTCGGGTGCCAGGGGGTTTTCCATGTGGCCACTCCTGTGCCTTCGGAGGACCTGACTGACCCAGAGCTACAAATGCTGGGTCCTGCTGTTACCGGCACCACGAATGTGCTCAAAGCTGCCTCCAGCGCGAACGTCCAGCGAGTGGTGGTGGTGTCGTCCATGGTTGCCGTCGAGATCAGCCCCAAAGATTGGCCTGAAGGTAAGGTCCGAGATGAGAGGTGCTGGTCAGACCGAGAGTTCTGCAGGAGCATTGAGAGCTGGTACCCGGTGGCTAAGATCATCTCAGAGGAGGCGGCGCTGGCGTACGGGCAGCAAACCGGGCTCGATGTGGTGACTATCAATCCAGGGTTGGTGTTCGGCCCCATGCTGCAGCCGACGGTCAACACGACCATCCAGTTCCTCATCTACTTCCTCAAAGGAGGCCCCGACCCGGTGAAGAACAAGCTCTGGCATATCGTCGACGTCCGTGATGTGGCCGACGCCATGCTGCTGCTCTACGAGGTGCCTGAAGCGACCGGCAGACACATCTGCGCGCCTCATGTTATCAGTGCCCGCGACCTGCTGGATCTGCTGAAGAGCATGTACCCTGACTACCCTTGCATTGCCAACGAGAGCATACTTGACAGAGACCACCCAGCGCCGATGACCTCTGACAAGCTGAAGAAGATCGGGTGGAGCTGCCGACCGCTGGAGGAGACGATCGTGGACACCGTCGAGTCTGAGCTCATCTccgcgcgctgccgccgccgccgccgccgctcgacgcccaccgcgcAGCCATGGCGGAACAGACCGAGAAGGCTTTTCTCAAGCAGCCTAAGGTGTTCCTCAGCTCAAAGAAATCTGGCAAGGGTAAGAAGCCAGGCAAGGGTGGCAATCGATTTTGGAAGAGCATTGSCCTTGGGGTTTCAAGACTCCCAGGGAAGCAATTGAAGGCACYTACATTGACAAGAAATGTCCATTCACTGGAACCGTTTCTATCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAAATGAACAGAACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAGGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAAGTCATTCCAGCTGGATCTGCTGCTGCTGGCAAGAAGGCTTTCACCGCAGCCTGAGTTTAAAACTATGTTCGATGAGTAGTTTATAGAGTGATGTCTTTTTTTGTTAAAAAAACTGCCTTCTAGGCTTGTGCCTTTCGAATATGGTTTGGAGATTGTTCCCATCTTAATGAAGTCCAATCATCTGAACATGTTACTGTTTATTGTACCTGTCGTGCAAAGTTTTGCAAGATCTGTATTGTTTCCGCaaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.2157 | translated coding region predicted by ESTScan from UniGene Zm.2157 | VTRERSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVESELISXALPPPPPPLDAHRAAMAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGXSILEEHXPWGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTAA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR10366 | 4-354 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | ERSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVESELISXALPPPPPPLDAHRAAMAEQTEK |
| HMMPanther: PTHR10366:SF74 | 4-354 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | ERSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVESELISXALPPPPPPLDAHRAAMAEQTEK |
| Seg: seg | 15-28 | seg | AGGGATVCVTGAGG |
| superfamily: SSF51735 | 18-329 | NAD(P)-binding Rossmann-fold domains | GATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVESEL |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
19-282 | no description NAD(P)-binding domain
|
ATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMY |
| HMMPfam: PF01370 IPR001509
|
21-263 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHI |
| Seg: seg | 75-86 | seg | ADLLDYDAMAAA |
| Seg: seg | 126-144 | seg | AASSANVQRVVVVSSMVAV |
| Seg: seg | 335-340 | seg | PPPPPP |
| Seg: seg | 365-381 | seg | SSKKSGKGKKPGKGGXS |
| HMMTigr: TIGR03630 IPR019978
|
403-491 | arch_S17P: archaeal ribosomal protein S17P Ribosomal protein S17, archaeal
|
IDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKV |
| Gene3D: G3DSA:2.40.50.140 IPR012340
|
415-496 | no description Nucleic acid-binding, OB-fold
|
IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGS |
| superfamily: SSF50249 IPR016027
|
416-495 | Nucleic acid-binding proteins Nucleic acid-binding, OB-fold-like
|
RGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAG |
| BlastProDom: PD001295 IPR000266
|
418-488 | Q7XIK5_ORYSA_Q7XIK5; Ribosomal protein S17
|
RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV |
| HMMPfam: PF00366 IPR000266
|
422-491 | Ribosomal_S17 Ribosomal protein S17
|
GTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKV |
| FPrintScan: PR00973 IPR000266
|
436-459 | RIBOSOMALS17 Ribosomal protein S17
|
RRNYLHFVKKYQRYEKRHSNIPAH |
| FPrintScan: PR00973 IPR000266
|
469-479 | RIBOSOMALS17 Ribosomal protein S17
|
GDHVIIGQCRP |
| PatternScan: PS00056 IPR019979
|
469-481 | RIBOSOMAL_S17 Ribosomal protein S17, conserved site
|
GDHVIIGQCRPLS |
| FPrintScan: PR00973 IPR000266
|
479-486 | RIBOSOMALS17 Ribosomal protein S17
|
PLSKTVRF |
| Seg: seg | 494-507 | seg | AGSAAAGKKAFTAA |
List of Contributions
There has not been any contribution yet.
