PRGDB00063944 (Zm.6870)

Zm.6870
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	195638943 (EU966822)
Gene Class	Unknown
Domain Type
Gene Species	Zea mays
	Comment?

Zea mays clone 297597 dihydroflavonol-4-reductase mRNA, complete cds

DNA Sequence

AAATAGGTAGATGATGCCGCTAACAGTAACACAGAGTAAAAGACTCCAATTTTCCCACGGCTACTGAATCACGGATGCTTAAATCTCCCCAATCCGTATCTCTGTTTCCCTCACAGCGCGGCTGCCTATAACCACTCCAGGTCTCCAGCGAAGCAGGCTCAGGCGCAACGCAACAACACAAGGCGGCGGTTATGGCCTCTGCTGCTGCGACGGCTACGATGGGGACGGGGAAGGTGGTGTGCGTCACCGGCGCATCAGGGTACATCGCGTCCTGGATTGTCAGGCTCCTCCTCGACCGCGGCTACACCGTCCGCGCCACCGTGCGAGACACCGCTGACCCAAAGAAAACATTGCACCTGACTGCGTTGGATGGTGCTAAGGATAGGCTGCACTTATTTAAAGCTAGCCTGCTAGAAGAGGGTTCTTTCGATGCTGCAGTTCATGGATGCGACACTGTATTTCATACTGCCTCTCCCTTTTATCACAATGTCAAGGATGCTAAGGCAGAGTTACTTGACCCAGCAGTTAAGGGAACACTCAATGTTCTCGGTTCATGCAAGAAAGCTTCTATTAAAAAGGTGGTTGTAACATCATCTATGGCTGCTGTAGCCTACAACGGGAGGCCAAGGACTCCTGAGGTCACAGTTGACGAGACATGGTTTTCTGATCCACAAATTTGTGAAACAAATCAGCAATGGTATATTTTGTCCAAGACGCTGGCAGAGGAGGCTGCTTGGAAGTTCTCAAGGGATAATGGACTTGAAATCGTTACTATAAACCCAGCGATGGTTATTGGTCCCCTGCTGCAGCCTACACTAAATACCAGTGCTGAAGCAATCCTGAAGTTAATCAATGGGTCATCGTCTACATATCCCAATTTTTGCTTTGGATGGGTTAATGTCAAGGATGTTGCCCTGGCCCATATCCTTGCATACGAGGTTCCCTCATCAAATGGAAGGTACTGCATGGTGGAAAGAGTTGTTCACTACTCAGAACTGGTGAACATTATCCGCAACATGTATCCTACCCTTCCTCTTCCGGACAAGTGTGCAGATGACAAGCCGTTTGTCCCACCCTACCAAGTATCAAAGGAGAAGATAAAAAGCATAGGCATCGAGTTGATTCCACTGGAGACGAGCGTCAAGGAGACCATCGAAAGCTTGAAAGAGAAGGGGTTCGCTAGTTTTTGACTCGTGCAAGCTGTGAAACAGAAGTGTTACTGTACTACGTGATGTTGCATTGTACACATGCATCGGACTTCGCAGTTCCCAAGCTATTTTGGTAGCTTTGGTCTGTAAGATTACCTAAAATAAACTGAGCCACGTTGCCACGCTGTAGCTTTTGTACATGTTATGCTTTGATCGGATTGAGACACGTGATATATGGTCGTTGCTTACaaaaaaaaaaaaaaaa

Protein sequences

Name	Description	Sequence
Zm.6870	translated coding region predicted by ESTScan from UniGene Zm.6870	MGTGKVVCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDVALAHILAYEVPSSNGRYCMVERVVHYSELVNIIRNMYPTLPLPDKCADDKPFVPPYQVSKEKIKSIGIELIPLETSVKETIESLKEKGFASF

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF51735	3-317	NAD(P)-binding Rossmann-fold domains	TGKVVCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDVALAHILAYEVPSSNGRYCMVERVVHYSELVNIIRNMYPTLPLPDKCADDKPFVPPYQVSKEKIKSIGIELIPLETSVKETIESLKE
HMMPanther: PTHR10366	4-320	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	GKVVCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDVALAHILAYEVPSSNGRYCMVERVVHYSELVNIIRNMYPTLPLPDKCADDKPFVPPYQVSKEKIKSIGIELIPLETSVKETIESLKEKGF
HMMPanther: PTHR10366:SF9	4-320	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	GKVVCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDVALAHILAYEVPSSNGRYCMVERVVHYSELVNIIRNMYPTLPLPDKCADDKPFVPPYQVSKEKIKSIGIELIPLETSVKETIESLKEKGF
Gene3D: G3DSA:3.40.50.720 IPR016040	5-231	no description NAD(P)-binding domain	KVVCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDV
HMMPfam: PF01370 IPR001509	7-246	Epimerase NAD-dependent epimerase/dehydratase	VCVTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLHLTALDGAKDRLHLFKASLLEEGSFDAAVHGCDTVFHTASPFYHNVKDAKAELLDPAVKGTLNVLGSCKKASIKKVVVTSSMAAVAYNGRPRTPEVTVDETWFSDPQICETNQQWYILSKTLAEEAAWKFSRDNGLEIVTINPAMVIGPLLQPTLNTSAEAILKLINGSSSTYPNFCFGWVNVKDVALAHILAYEVPSSNG

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Analyses

Blast

Blast matches against Reference R-Genes. Show