PRGDB00064023 (Zm.20008)
| Zm.20008 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 54652809 (BT018028) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
GCACCCGTGTGACAACGAGAGCAAGAAAGTATCAAAACCCGAGACCTTTGGAGGCGGTGGGGAAGAGCGTGTGCGTGACCGGCGCGGGCGGCTTCATCGCGTCATGTCTGGTGAAGCTCCTCCTCTGCCGGGGCCAATACAAGGTCCGCGGCACCGTGCGCGACCCTGGTGCTAGCAAGAATGCTCATCTCAAGGTGCTGGAAGGGGCTGGGGAAAGGTTGCAGCTTGTCAAGGCTGATTTGTTGGACTACAGCAGTGTTGCATCAGCAATTGCCGGCTGTGAGGGTGTCTTCCATGTAGCTAGCCCTGTCCCTTCCGGTCGGTCCTCCAACCCTGAGGTGGAGGTCATAGGTCCTGCTGTAACAGGTACAATCAATGTGTTAAAGGCTTGCTATGAGGCAAAAGTTGGGCGAGTTGTGGTGGTCTCTTCATGTGCAGCTGTCTATGCTAATCCTAATTATCCAAAGGGTAAGGTCTTTGACGAAGACTGCTGGTCAGATGAAGCTTACTGCAGGAAGAACGAGGATTGGTATTTTGTTTCCAAGACACTGGCGGAACGAGAGGCTTTTGTTTATGCAGCAAAAACAGGGCTGGATGTTGTAACTATTTGCCCGTCGTTAGTATTTGGACCCTTGATGCAGCCTACAGTAAATTCGAGCAGCAAAATCATCCTTAAATATTTCACAGGAGATCGCGAGACTGTTGAAAACATACTCAGAAATATGGTGGATGTTCGTGATGTTGCTGACGCTCTTCTTCTGGCTTACGAAAAGCCAGAAGCGTCTGGACGATACATCTGCAGTTCACATGCAATAAAAAGTGCTGATATGATAAACATACTGAAGACCTTGTATCCATCTTACCCTTATCCCAAAAATTTTGTGGAAGATGATGTCAACTCTGTATACAGCTCTGAGAAACTGCAGAAGCTGGGGTGGAGCTTCAAGCCTATAGAGGAATCCCTCCGCGACACTGTTGAATTGTACAAAGCATTTGGCATCCTGAATTGAACATCCAGCTACGACTGTTCCATCTGCTGTTTTTGCCTCCGAACTCTTTCTGAATAATAATGTATGTAGGCAGTGAAACAGCATTGCCAGCAGGTTAATCCTGGCATCATGCTGGAGCAGCCCCGCAGTTCTCTCttttttttttCATCCCCAATACTATCTAGTGGTTCAGGACCAAATAAGTAGGCCCCGTGCTGACTGGTTTATGGCTTGTGGCCTATTGTCGCTGCTAAAACTAGAAGCGTTCGTACTATCTTGCACTGCTGCACTTGATTGCTCATCATTCTGGTGCAATTTGATTTGAGCTTCTGAAAGACGCAAAAAAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.20008 | translated coding region predicted by ESTScan from UniGene Zm.20008 | XTRVTTRARKYQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR10366 | 11-336 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | YQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN |
| HMMPanther: PTHR10366:SF74 | 11-336 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | YQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN |
| superfamily: SSF51735 | 21-331 | NAD(P)-binding Rossmann-fold domains | GKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKA |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
22-284 | no description NAD(P)-binding domain
|
KSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTL |
| HMMPfam: PF01370 IPR001509
|
24-265 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRY |
| Seg: seg | 134-150 | seg | AKVGRVVVVSSCAAVYA |
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