PRGDB00064254 (Zm.67039)
| Zm.67039 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 223947958 (BT063366) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
CGGGTCGGAACCTCAGCTCAGAGGATCGGAAGAACGGACGACGGCGAGATGGCAAGCGGGGAAGAAGGCAAGGGCGAGACGGTGCTGGTCACCGGGGCCAGCGGCTTCATCGGTTCGACCCTCGTCCGCGGCCTCCTCGGCCGCGGCTACAACGTCCGCGCCGGCGTCCTCGACCCCGGTCAGTAGAGTACAGTAGCCCTAGCCCCGCACTCTCCGCCGGCTTTGCTTCCTCTCCTCCTGAACAAGCGTCGCCATGAATAATGACGCCGGGAGAGAAAGCTGCTGGCCCCTTGCCCGCCTGCGACGCGGCGCTCGCTCAGCTCATCGAGTGCGCCGCGGTGGTGTGCATGCAGACGACAGGGCGGAGACGGAccacctcctcgcgctcgccgccggcgccggccgccTCAGCTTCTTCCGCTGCGACCTCCTGGACGGCGCCGCGCTGCTCGACGCGGCAAGGGGGTGCTCGGGCGTCTTCCACCTCGCGTCACCCTGCACCGTCGACCCCGTCAAGGACCCCCAGAATCAGCTGATGGTGCCTGCGGTGGAAGGGACGCTGAACGTGGTGCGCGCGGCCAAGGACGCCGGCGGAGTGCGGCGGGTGGTCGTGACCTCGTCCATCTCGGCCGTCGTGCCCAACCCCGGGTGGCCCGCCGGCGAGGTCGTCGACGAGCGTTGCTGGACCGACATCGACTACTGCGAGAAGAATGGGGTTTGGTACCCTGCTTCCAAGACGCTGGCGGAGAAGGCGGCGTGGAAGTTTGCAGAGGAGAACGGGCTGGATGTGGTTGTGGTTAACCCGGGGACTGTGCTGGGCCCGATGATTCCACCAGCCATCAACGCTAGCATGGCCATGTTTTGTCGCCTCCTTCAAGGCTGCACGGAGGAGTACGCCGATTTCTTCCTAGGGCCAGTGCACGTGGAAGACGTCGCCATGGCGCATATCCTGGTGTTCGAGAGCGCATCGGCGTCGGGGAGGCACCTGTGCGTCCACTCCATCTGCCACTGGAGCGACTTCGCCGCCAAAGTCGCCGAGCTCTACCCCGACTACAAAGTGCCCAAGTTCCCCATGGACACCCAGCCTGGGCTGGTGAGACAGGAGGTGGGGTCCAAGAAGCTCACCGCGCTGGGGCTTCAGATCACCCCCATGGAGAAGATCATCAGGGATGCCGTCGAGAGCCTCAAGAGCCGAGGCCACATCTCCTGAATCCTGATGGATGGCAGGATGGGCAGTGCTTGTGATGCGTGAGGCCGTACGTCATGGACCTTGCTAAGTTGCTAGCGTGGCTTGTGTAACTAGTTGTAATAAATAATGATGTCACCAGACGACGACGACGAACCTGAGAAGGAAAATTGAGCTAATAGCTCGATTTTCAGTTCTTAATCACGAAGTTTCAGGTACCGAACTGGATTGGATTCTTTGTCGCAGATGAGGCCTAGAGACACACGCTGAACGTTCTGATAGTTGCCGTCAACTGTACTTGGCCACGCCATTTGCTCCTCCTCTTCTTTGGCCTGCACTCTGCACAAAGTTCAGTAATGTGCTTTGGTGCAGGATCATGAGCAACTGTATACAGATTTTTTGGGGGTGCAAAACAGTGAAGCACCCTCTAAAGCCTTTCGTTCGGTTGTACGTGGATCGGAAGTGGTTGAGAGT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.67039 | translated coding region predicted by ESTScan from UniGene Zm.67039 | XGRNLSSEDRKNGRRRDGKRGRRQGRDGAGHRGQRLHRFDPRPRPPRPRLQRPRRRPRPRSVEYSSPSPALSAGFASSPPEQXVAMNNDAGRESCWPLARLRRGARSAHRVRRGGVHADDRAETDHLLALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQGCTEEYADFFLGPVHVEDVAMAHILVFESASASGRHLCVHSICHWSDFAAKVAELYPDYKVPKFPMDTQPGLVRQEVGSKKLTALGLQITPMEKIIRDAVESLKSRGHISXILMDGRMGSACDA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 10-35 | seg | RKNGRRRDGKRGRRQGRDGAGHRGQR |
| Seg: seg | 41-60 | seg | PRPRPPRPRLQRPRRRPRPR |
| Seg: seg | 98-117 | seg | LARLRRGARSAHRVRRGGVH |
| HMMPanther: PTHR10366:SF9 | 101-408 | CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE | LRRGARSAHRVRRGGVHADDRAETDHLLALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQGCTEEYADFFLGPVHVEDVAMAHILVFESASASGRHLCVHSICHWSDFAAKVAELYPDYKVPKFPMDTQPGLVRQEVGSKKLTALGLQITPMEKIIRDAVESLKSRGHISXILMD |
| HMMPanther: PTHR10366 | 101-408 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | LRRGARSAHRVRRGGVHADDRAETDHLLALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQGCTEEYADFFLGPVHVEDVAMAHILVFESASASGRHLCVHSICHWSDFAAKVAELYPDYKVPKFPMDTQPGLVRQEVGSKKLTALGLQITPMEKIIRDAVESLKSRGHISXILMD |
| superfamily: SSF51735 | 109-398 | NAD(P)-binding Rossmann-fold domains | HRVRRGGVHADDRAETDHLLALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQGCTEEYADFFLGPVHVEDVAMAHILVFESASASGRHLCVHSICHWSDFAAKVAELYPDYKVPKFPMDTQPGLVRQEVGSKKLTALGLQITPMEKIIRDAVESLKS |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
120-294 | no description NAD(P)-binding domain
|
DRAETDHLLALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQG |
| Seg: seg | 127-137 | seg | LLALAAGAGRL |
| HMMPfam: PF01370 IPR001509
|
129-329 | Epimerase NAD-dependent epimerase/dehydratase
|
ALAAGAGRLSFFRCDLLDGAALLDAARGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAAKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAWKFAEENGLDVVVVNPGTVLGPMIPPAINASMAMFCRLLQGCTEEYADFFLGPVHVEDVAMAHILVFESASASGRH |
| Seg: seg | 143-154 | seg | DLLDGAALLDAA |
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