PRGDB00064295 (Zm.81403)
| Zm.81403 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 21206848 (AY103770) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
GCACGAGGAAACGTCTAGATCGCTCGTCCGGTGTGGTCTCTGGACTTGCTTGCCGTTCACTTCTCTTCAGCGGCAGCGTGGCAAGGCAACGAGAGCAACGAAGAGTATTCAAACCGAAAACAATGGATCCGGTGCGGAAGAGCGTGTGCGTGACCGGCGCTGGCGGCTTCGTCGCGTCGGAGCTGGTGAAGCTCCTCCTCTCCCGGGGCCAATACGCGGTCCGCGGCACCGTGCGCGACCCTGGTGCTAGCAAGAATGCCCATCTCAAGGTGCTGGAAGGAGCTGAGGAAAGGTTGCAGCTTCTCAAGGCTGATCTGATGGACTACGACAGCATTGCATCAGCAGTTGCCGGCTGTGAGGGTGTCTTCCATGTAGCTAGCCCTGTCCTTTCCCATCGACCCTCCAACCCTGAGGTGGAGGTCATAGCTCCCGCTGTAATAGGTACAACCAATGTGTTAAAGGCTTGCTATGAGGCAAAAGTTAGGCGAGTTGTGGTGGTGTCTTCATGTGGAGCTGTGTATGCTAATCCTATTTATCCGAAGGTAAGGTGTTTGATGAAGACTGCTGGTCAGATGAGGATTACTGCAGGAAGAAGGAGGATTGGTATTTAGTTTCCAAAACACTGTCGGAACGAGAAGCTCTTGCTTTTGCAGCAAAAACAGGGCTGGACGTTGTAACTGTTTGTCCGTCATTAGTATTTGGACCCTTGATGCAGCCTACAGTAAATTTGAGCAGCGAAATGATCCTTAAATATTTCAAAGATCTCGAGACTGTTGAAAATGTACTCAGTAATATGGTGGATATTCGTGATGTTGCTGATGCTCTTCTTCTGACTTACGAAAAGCCAGAAGCGTCTGGACGATACATCTGCAGTTCACATGCAATAAAAATTTCTGATATGATAAACATACTGAAGACCATGTATCCGTCTTACCCTTATCCCAAAAATTTTGTGGAAGATGATGTCAACTCTGTATACAGCTCTGAGAAACTGCAGAAGCTGGGGTGGACCTTCAAGCCTATAGAGGAATCCCTCCGTGACACTGTTGAATCCTACAAGGCATTTGGCATCCTGAATTGAACATCCAACTAGGACTGTTTCCATCTGCTGTTGCCTCCGAACTCCTCCTGAATAATGTAGGCGCAGTTAAACAGCAGCAGCACTGCCGATCTCTTTATTTTTCAATATTGTTATCTAGTGGTTCAGGACCAAATAAGTAGGCCAGGTGCTGACTGTTGTATGGTTTGTGGCCTATTGTCGTTGCTAAAAACTAGAAATGCGCGTACTAATGTTGCATTGCTGCACTTGATTTGTTTGTCGTCaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.81403 | translated coding region predicted by ESTScan from UniGene Zm.81403 | XTRKRLDRSSGVVSGLACRSLLFSGSVARQREQRRVFKPKTMDPVRKSVCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPKNFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGILN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR10366:SF74 | 31-360 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | REQRRVFKPKTMDPVRKSVCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPKNFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGILN |
| HMMPanther: PTHR10366 | 31-360 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | REQRRVFKPKTMDPVRKSVCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPKNFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKAFGILN |
| superfamily: SSF51735 | 47-355 | NAD(P)-binding Rossmann-fold domains | KSVCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTMYPSYPYPKNFVEDDVNSVYSSEKLQKLGWTFKPIEESLRDTVESYKA |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
47-308 | no description NAD(P)-binding domain
|
KSVCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRYICSSHAIKISDMINILKTM |
| HMMPfam: PF01370 IPR001509
|
49-289 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFVASELVKLLLSRGQYAVRGTVRDPGASKNAHLKVLEGAEERLQLLKADLMDYDSIASAVAGCEGVFHVASPVLSHRPSNPEVEVIAPAVIGTTNVLKACYEAKVRRVVVVSSCGAVYANPXLSEGKVFDEDCWSDEDYCRKKEDWYLVSKTLSEREALAFAAKTGLDVVTVCPSLVFGPLMQPTVNLSSEMILKYFKDLETVENVLSNMVDIRDVADALLLTYEKPEASGRY |
| Coil: coil | 85-113 | coiled-coil | KNAHLKVLEGAEERLQLLKADLMDYDSIA |
List of Contributions
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