PRGDB00064764 (Aan.14531)

Aan.14531
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	259584186 (EZ293529)
Gene Class	Unknown
Domain Type
Gene Species	Artemisia annua
	Comment?

TSA: Artemisia annua strain Madagascar Contig19916.Mt mRNA sequence

DNA Sequence

GGCAGAAAGGTTTATATGGAAAATGACAAATACTATTGGACCTAGTATTTGAGATAATAAAATGTCCTCTATTACCTTTCAAATTGTGCAGCATCAAACTATGAGCGGTGAGGGGAAAGTGGTTTGTGTGACAGGTGCTTCCGGCTTCATTGCTTCATGGCTCGTTAAGCTCTTGCTGGCTCGTGGCTACTCTGTTGTTGCTACTGTTCGATCACTTGGTGATCCGAAAAAGACAGAACATTTACTTGCTCTCGATGGAGCTAAAGAAAGACTATCTTTGTTTGAAGCTAACTTGACTGAAGATGGTTCTTTCGACTCTGCAGTTAAAGGCTGCATATGCGTCTTTCACACAGCATCTCCTGTTCATCTTGTAGTTGATGACCCACAGGCGCAATTGATAGATCCTGCAGTGAAGGGGACACTTAATGTTCTTAACTCAGCTTCAAAAGTTCCATCTCTCAGAAGAGTCGTCTTGACATCTTCCATGGCTTCAGTTTTGTTCGGTGCAAAAGTTCCAGTATTTGGTGATGTGGTGGATGAAACCTGGTTTTCAGACCCAACAGTTTGTCAGAAAAGAAATTCGTGGTATTGCGTTTCAAAGACTATGGCTGAGGATGCTGCTGTGAAGTTTTCACAAGAGAACAATATGGATTTGGTGGTGATAAATCCTGGCTTTGTGATTGGTCCTATCTTACAGCCAACTCTCAACAACACTTCTAAGAGATTCATGAACTTTATAAAAACCGGAGAGGATGTATTTTCAGATAGAGTCTATATACTTGTTGATGTAAGAGATGTTGCGATTGCACATATATTAGCCTTTGAGAAGCCCGAAGCTAATGGCAGATACTGTGTGGTTGGGAATGTGATTCATTCTTCTGAAATCATGAAGATTGTAGCCAAACTCTACCCAACTCTTGGCCATTCTAAAGGGTATACAGATGGGAAGGATGCTGAGCCCCAATTTTACAGTGTATCTAGGGTAAAGGCGGAAGGTCTAGGTGTTGAGTTTACTCCGGTGGAGGTAAGCATTAAGGACACTATTGAAAGCTTGAAGGGGAAGAACTTGTTGAGCTTATAAAACACCAAACAACATTTC

Protein sequences

Name	Description	Sequence
Aan.14531	translated coding region predicted by ESTScan from UniGene Aan.14531	MSSITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLLSL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF9	4-337	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	ITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLL
HMMPanther: PTHR10366	4-337	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	ITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLL
superfamily: SSF51735	8-333	NAD(P)-binding Rossmann-fold domains	IVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKG
Gene3D: G3DSA:3.40.50.720 IPR016040	19-240	no description NAD(P)-binding domain	KVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYIL
HMMPfam: PF01370 IPR001509	21-263	Epimerase NAD-dependent epimerase/dehydratase	VCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRY

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Analyses

Blast

Blast matches against Reference R-Genes. Show