PRGDB00067104 (Bna.4113)

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Bna.4113
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 65298425 (CN828639)
Gene Class RLP
Domain Type Ser-Thr Kinase, LRR
Gene Species Brassica napus

Comment?

EL2997R Brassica embryo library (EL) Brassica napus cDNA clone EL2997 5', mRNA sequence

DNA Sequence

TCGAGTTCATGAACGGTCTGAAGCTTTTGTCCTCCATGTCACATGAAAACTTAGTGAAGCTGCGTGGCTTCTGCTGTTCTAGAGGCAGAGGAGAGTGTTTCCTCATCTATGATTTCGCTTCGAAAGGAAAGCTCTCAAGTTTTCTTGACTTGCAAGAAAGAGAAACCGGTCGAGTTCTTGCTTGGCCCGCAAGAGTCTCTATCCTCAAAGGGATTGCAAAAGGTATTGCTTACTTACATGGAAGTGATCAAGAGAATAAGCATGCTATTGTTCATCGAAACATATCGGTCGAGAAGATCCTACTAGATGAGCTGTTCAACCCGTTGATCGCTGACTCAGGTCTTCACAACCTTCTAGCAGACGATTTGGTCTTCTCAGCACTCAAAACAAGTGCAGCAATGGGATACTTAGCTCCAGAGTACGTTACAACCGGAAGATTCACGGAGAAAACCGACGTTTTCGCCTTTGGAGTCATCATTCTCCAAATACTCTCTGGCAAGCTCATGCTTACAAGCtcactgaggactgcagctgagaatggagaacactttggattcatggatgaatatctcggcgaagGGTTTGATAAA


Protein sequences

Name Description Sequence
Bna.4113 translated coding region predicted by ESTScan from UniGene Bna.4113

XEFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLTSSLRTAAENGEHFGFMDEYLGEGFDK

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-197 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XEFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLTSSLRTAAENGEHFGFMDEYLGEGFDK

HMMSmart: SM00219
IPR020635
1-191 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

XEFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLTSSLRTAAENGEHFGFMDEYL

HMMSmart: SM00220
IPR002290
1-186 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

XEFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLTSSLRTAAENGEHFGF

HMMPfam: PF07714
IPR001245
2-166 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase

EFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSG

Gene3D: G3DSA:1.10.510.10
2-171 no description

EFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLT

superfamily: SSF56112
IPR011009
2-168 Protein kinase-like (PK-like)
Protein kinase-like domain

EFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKL

HMMPanther: PTHR24420
2-196 FAMILY NOT NAMED,FAMILY NOT NAMED

EFMNGLKLLSSMSHENLVKLRGFCCSRGRGECFLIYDFASKGKLSSFLDLQERETGRVLAWPARVSILKGIAKGIAYLHGSDQENKHAIVHRNISVEKILLDELFNPLIADSGLHNLLADDLVFSALKTSAAMGYLAPEYVTTGRFTEKTDVFAFGVIILQILSGKLMLTSSLRTAAENGEHFGFMDEYLGEGFD






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