PRGDB00067912 (Ccl.206)
| Ccl.206 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 110841839 (DY260915) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Citrus clementina |
DNA Sequence
AAGCTCTCCGCCCAAAAAGAATTCATCTTCACAGCAAACGTTCGAGAAGTCTACCAGTTGAATCAATCACCACCCCCCAATACGTAAGCTCCAATTTGTAGCGTCGGTTTCGCCAGGCAATTTTGTGTGAGCTGGATCAAAATTTTAGATACTGAATCATCATATTTTGTGTTGGTGTGTTTTTTTGCCTGCGCAAATTCGATCTTGACTCGATGCAGTTGTTGAATACGTGGACTGAGTCGACAGATCACGTGAGAGATGGCGGCGTTTGAGCTGTATCGCAGGTCGACGATTGGGATGTGCTTAAGCGAGACTTTAGACGAGATGGTCCAGAACGGTACGCTTACTCCCGAGCTCGCTATGAGAGTTCTCGTCCAGTTCGATAAGGCTATGACAGAAGCGCTACAAACTCAGGTGAAGAGCAAGGTCGCCATTAAGGGGCATCTGCACACCTACAGGTTCTGTGACAATGTGTGGACATTCATCTTGCAAGATGCTTTGTTCAAGAGTGAGGAATTACAAGAGACCGTCGGTAGGGTGAAGATAGTGGCATGTGACTCAAAGCTGCTATCACAATAAGACAATGAAGATTGGTGTGTTGCTGGGGAATTAGGTTAAATTACTTGGAGAAGGTGGCAATTATGCATTAATGGTGAACCTAATTGGTAAAGCCGCCAACTGTTTTCAACTGGTGATGAATGTAAAGCCATTGAGGCTGCTACCACCTTGCTTTTGCGGATCTCAATAATGGGACCAATGGGGAGCATATTCCCCCACTGGACCCATTACCCCTTAAAATTTTGCTTATGGTGAGAAAAAGaatttattaccattaccagttaataatttaatttattattatcctaaattaaattaattGGTTGG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ccl.206 | translated coding region predicted by ESTScan from UniGene Ccl.206 | MAAFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQTQVKSKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| BlastProDom: PD009224 IPR015872
|
1-50 | T2AG_ARATH_Q39236; Transcription initiation factor IIA, gamma subunit
|
MAAFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQ |
| HMMPIR: PIRSF009415 IPR003194
|
1-106 | Transcription initiation factor IIA, gamma subunit Transcription initiation factor IIA, gamma subunit
|
MAAFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQTQVKSKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ |
| HMMPanther: PTHR10966 IPR003194
|
1-106 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Transcription initiation factor IIA, gamma subunit
|
MAAFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQTQVKSKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ |
| Gene3D: G3DSA:1.10.287.190 IPR015872
|
2-54 | no description Transcription initiation factor IIA, gamma subunit
|
AAFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQTQVK |
| HMMPfam: PF02268 IPR015872
|
3-50 | TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit
|
AFELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQ |
| superfamily: SSF47396 IPR009083
|
4-54 | Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA, helical
|
FELYRRSTIGMCLSETLDEMVQNGTLTPELAMRVLVQFDKAMTEALQTQVK |
| HMMPfam: PF02751 IPR015871
|
52-101 | TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit
|
QVKSKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDS |
| superfamily: SSF50784 IPR009088
|
52-102 | Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA, beta-barrel
|
QVKSKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK |
| Gene3D: G3DSA:2.30.18.10 IPR009088
|
55-104 | no description Transcription factor IIA, beta-barrel
|
SKVAIKGHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLL |
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