PRGDB00068331 (Ghi.1064)

Ghi.1064
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	164350949 (ES815762)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Gossypium hirsutum
	Comment?

UFL_282_67 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

DNA Sequence

GGCACGAGCTTTTGTATGCTAGAACAGGAAAGCGTACCAGTAAAGTGCAGAGTCCAACTACTGTACTCATACACCCTCATCATTCCGATGACCAGGATGGAGTTAAAATCACTGTCGCTGGATCAAGTGTCACTGGTGGAAGTGAAACTTTCAGCCACACGAGCAGTGGACCAAGTGATGTTCACTTGGTTGAGGCTGGCAACATGGTGATCTCGATTCAAGTTTTGAGGGATGTGACAAATAATTTCAGTGAGGAAAATGTGTTAGGAAGGGGTGGTTTTGGGACAGTTTACAAAGGGGAATTACATGATGGGACAAAGATTGCTGTGAAAAGGATGGAGTCCAGTGTTGTGAGCGAGAAGGGTTTGGCCGAGTTTAAGTCCGAGATTGCAGTTCTTACTAAGGTTCGTCACCGCCATTTAGTTGCACTTCTTGGATATTGCTTGGATGGAAATGAGAGGCTTCTTGTATATGAATATATGCCTCAAGGGACCCTTAGTCGGCATCTATTCAACTGGAAACATGAAGGTCTGAAACCACTTGAATGGACTAGACGACTTACAATTGCCCTAGATGTCGCTCGAGGTGTTGAGTATCTACATGGTCTGGCACAACAGAGTTTCATTCATCGAGATCTTAAGCCGTCAAATATTCTTCTCGGAGACGATATGCGTGCCAAGGTTGCAGATTTTGGCTTGGTCCGTCTAGCTCCTGTGGATGGCAAACAGTCTATTGAAACAAGACTAGCAGGAACCTTTGGGTATTTGGCACCGGAGTATGCAGTTACTGGACGAGTAACCACGAAGGTAGATGTGTTTAGCTTTGGTGTGATCCTCATGGAATTGATCTCAGGCCGAAGGGCACTTGATGAACTCAACCTGAAGAAAGCATGCACTTTGTGTCATGGTTTCCTCCGATGCCCATGAACAAGAAAACTTTCCGGAGGCCATTGATAAAACAATCCAGCTTGATAAGGAAAGCTAGCCAGTGGTAGCACAGTGACTGAACTTGCTGGCCCCGGTGTGCCAGGGACCCCAACAAAGGCCGAAATGAACCATGCGGTCATGGGCCTTTCATCCCATACAAAATTTCGGGAAACCACCAAAACCCGATTCCCAACAACTCTTATGGGTTTTAACCTTAAATTAATTTtaccccaaaccctttaaaaaaagggggaaccccttccggggggaaaaaccaaattggggaatgaacccccctctattttttttggggaaaaaaaaaaaaaaacaaacaccaaaaacaaaaacaaaaacaacttggcgggcccggcccccccgaggggttttttttgttttttttatttttt

Protein sequences

Name	Description	Sequence
Ghi.1064	translated coding region predicted by ESTScan from UniGene Ghi.1064	XHELLYARTGKRTSKVQSPTTVLIHPHHSDDQDGVKITVAGSSVTGGSETFSHTSSGPSDVHLVEAGNMVISIQVLRDVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDELNLKKACTLCHGFLRCP

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR24420:SF467	51-291	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	FSHTSSGPSDVHLVEAGNMVISIQVLRDVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDE
HMMPanther: PTHR24420	51-291	FAMILY NOT NAMED,FAMILY NOT NAMED	FSHTSSGPSDVHLVEAGNMVISIQVLRDVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDE
superfamily: SSF56112 IPR011009	55-308	Protein kinase-like (PK-like) Protein kinase-like domain	SSGPSDVHLVEAGNMVISIQVLRDVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDELNLKKACTLCHGFLRCP
Gene3D: G3DSA:3.30.200.20	66-146	no description	AGNMVISIQVLRDVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLG
ProfileScan: PS50011 IPR000719	83-308	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDELNLKKACTLCHGFLRCP
HMMSmart: SM00219 IPR020635	83-305	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	FSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDELNLKKACTLCHGFL
HMMSmart: SM00220 IPR002290	83-305	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	FSEENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDELNLKKACTLCHGFL
HMMPfam: PF00069 IPR017442	85-291	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	EENVLGRGGFGTVYKGELHDGTKIAVKRMESSVVSEKGLAEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDE
PatternScan: PS00107 IPR017441	89-111	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	LGRGGFGTVYKGELHDGTKIAVK
Gene3D: G3DSA:1.10.510.10	147-292	no description	YCLDGNERLLVYEYMPQGTLSRHLFNWKHEGLKPLEWTRRLTIALDVARGVEYLHGLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPVDGKQSIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDEL
PatternScan: PS00108 IPR008271	208-220	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	FIHRDLKPSNILL

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Analyses

Blast

Blast matches against Reference R-Genes. Show