PRGDB00068430 (Ghi.8140)
| Ghi.8140 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 31324527 (AF487461) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Gossypium hirsutum |
DNA Sequence
gcacgagctcgtgccgaattcggcacgaggAGAGCTTCTTTGAAATTTCAAACTAATCTAAAGCTGTGTTATATGTCGGAGACATAAAATGAAAGAAGAACAGAATATAAAGACGACAGTGTTAGTAGACATTGGCCATGTGTTTCAGATTCTCGAATCTGCTGACTCTACTTCTGATTAGCTTTGCAGCTGCCGAGGATGTTGGTTTCATCTACAACGGATTCCGGTCGGCTAATCTAAACCTTGATGGCATTGCAGAACTCACTTCCAATGGACTCCTAAAGCTCACCAATAAAACCGTGCAAGAAACAGGTCATGCTTTCTACCCTCACCCCGTTGATTTCAAGAACTCTACCAACGGTTCTGTTTTTTCCTTCTCTTCCACCTTTGTCTTCGCCATACTTCCGGAGTATCCAACTCTCAGCGGCCATGGAATCGCTTTCGTGATTGCACCAACCAAAGGCCTCCCCGGATCTCTTCCAAGTCAGTATCTCGGACTGTTCAATGGGTCCAACAATGGCAATGATACAAACCATGTTGTTGCTGTAGAACTCGACACCATACGAAGTACGGAGTTCGATGATATCAATGACAATCACGTTGGGATTGACATTAATGGGTTGAAGTCTCCTACTTCTTCTCCAGCTGGATATTATGAGGACGACAGCCATGACTTTAAAAACCTGACCTTGATCAGTGGTAAGCAGATGCAAGTTTGGGTCGAATATCATGGTCTAGAAAAGAGAATGGATGTCACTTTAGCTCCATTTAAGGTTCCTAAGCCCGACACCCCACTTTTATCCTTGTCTCGTGATCTGTCTTCAATTGTTAACCGTGAGAATGTATGTTGGTTTTTCATCGTCAACTGGTTCGGTCCTCACATCTCATTATGTTTTGGGCTGGAGCTTTCAAGGTTAATGGTCCAGGCAGAAGAGCTTACCCTGTCTCAACTTCCCAAGCTTCCTCGGTTAGGACCAAAGAAAAAGCCGAAAGTTTTGACAATTGGGTTGCCTTTGATTTTGGTGAGCTTGGCTTTGGCAGGAGTTTCCGGTGCTGCTTACTTGGTAAGGAGGAAAAGGAAGTTTGCTGATGTAGTTGAAGATTGGGAGCTTGAGTATGGGCCTCATAGATTCAAGTTTAAAGATCTATATATTGCTACAAAAGGATTCAAAGACAAGGAATTATTGGGTGCTGGTGGATTTGGAAGGGTCTACAGAGGAGTTCTTCCAAGCAATAAACTTGAGGTTGCAGTGAAAAGAGTCTCGCATGAATCAAGGCAAGGGATGAGGGAATTTGTAGCAGAAATTGTGAGTATTGGTCGTCTTCGACACCGGAATTTAGTCCAACTCTTGGGATATTGCCGGCGCAAAGATGAGCTGCTTTTGGTCTATGACTACATGCCTAATGGAAGTCTTGATAAGTATTTGCATGACCAGCCAAAAGTCACCCTAAATTGGAGACAAAGATTCAGAGTCATCAAAGGTGTAGCATCAGGATTGTTCTATTTACATGGAGAATGGGATCAAGTTGTGGTTCATAGAAATGTTAAAGCCAGCAATGTTTTACTGGATGGCGAATTAAATGGAAGATTGGGAGATTTTGGGCTTGCTAGATTATATGACCATGGAACGGATCCCCAAACAACTCACGTTGTGGGAACTCTTGGTTATTTGGCTCCCGAGCATACTCGAACCGGGAAAGCCACGCCGTCCACCGATGTGTTTGCTTTCGGGGCATTTTTGCTTGAAGTTGCGTGTGGAAGAAGGCCAATAGAGGCAAAATCTCCGACAGAAGATGTAATCTTGGTAGATTGGGTGTATTCATGTTGGTCCAACGGTGATATTATGGAGGCCAAAGATCCGAATCTGGGTTCAGGTTATGAGGCAGAGGAAGTTGAGTTGGTTTTAAAACTTGGGTTGCTCTGCTCTCACTCAGAACCTGAAGCAAGGCCAACCATGCGGCAAAGTCCTTCAGTTTTTAGAAGGGGATCTTCCATTTCCAGAAATGTCATCACTCAGTCTCACTTCCAGTGGACTAACATTTGGACATCGACAAGGGTTTGATGATTATGTCATGTCGTATTCATCTTCCGTTTGCAAGGGATTCTCCCATTGTTCTGTTGCAGATTCTTTACTTTCTGGAGGTCGATGATTGTAAAATTTTTCTCAGTGTTAATAAGTTGTAATCCATTACTTTGCATAAAAGCTTACTTATTTGAATaaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ghi.8140 | translated coding region predicted by ESTScan from UniGene Ghi.8140 | MCFRFSNLLTLLLISFAAAEDVGFIYNGFRSANLNLDGIAELTSNGLLKLTNKTVQETGHAFYPHPVDFKNSTNGSVFSFSSTFVFAILPEYPTLSGHGIAFVIAPTKGLPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRENVCWFFIVNWFGPHISLCFGLELSRLMVQAEELTLSQLPKLPRLGPKKKPKVLTIGLPLILVSLALAGVSGAAYLVRRKRKFADVVEDWELEYGPHRFKFKDLYIATKGFKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFLEGDLPFPEMSSLSLTSSGLTFGHRQGFDDYVMSYSSSVCKGFSHCSVADSLLSGGR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:2.60.120.200 IPR013320
|
20-234 | no description Concanavalin A-like lectin/glucanase, subgroup
|
EDVGFIYNGFRSANLNLDGIAELTSNGLLKLTNKTVQETGHAFYPHPVDFKNSTNGSVFSFSSTFVFAILPEYPTLSGHGIAFVIAPTKGLPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRE |
| superfamily: SSF49899 IPR008985
|
21-234 | Concanavalin A-like lectins/glucanases Concanavalin A-like lectin/glucanase
|
DVGFIYNGFRSANLNLDGIAELTSNGLLKLTNKTVQETGHAFYPHPVDFKNSTNGSVFSFSSTFVFAILPEYPTLSGHGIAFVIAPTKGLPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRE |
| HMMPfam: PF00139 IPR001220
|
21-234 | Lectin_legB Legume lectin, beta chain
|
DVGFIYNGFRSANLNLDGIAELTSNGLLKLTNKTVQETGHAFYPHPVDFKNSTNGSVFSFSSTFVFAILPEYPTLSGHGIAFVIAPTKGLPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRE |
| Seg: seg | 71-86 | seg | NSTNGSVFSFSSTFVF |
| HMMPanther: PTHR24420:SF435 | 110-650 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | LPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRENVCWFFIVNWFGPHISLCFGLELSRLMVQAEELTLSQLPKLPRLGPKKKPKVLTIGLPLILVSLALAGVSGAAYLVRRKRKFADVVEDWELEYGPHRFKFKDLYIATKGFKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFLEGDLPFPEMSSLSLTSSGLTFGHRQGFDDYVMSYSS |
| HMMPanther: PTHR24420 | 110-650 | FAMILY NOT NAMED,FAMILY NOT NAMED | LPGSLPSQYLGLFNGSNNGNDTNHVVAVELDTIRSTEFDDINDNHVGIDINGLKSPTSSPAGYYEDDSHDFKNLTLISGKQMQVWVEYHGLEKRMDVTLAPFKVPKPDTPLLSLSRDLSSIVNRENVCWFFIVNWFGPHISLCFGLELSRLMVQAEELTLSQLPKLPRLGPKKKPKVLTIGLPLILVSLALAGVSGAAYLVRRKRKFADVVEDWELEYGPHRFKFKDLYIATKGFKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFLEGDLPFPEMSSLSLTSSGLTFGHRQGFDDYVMSYSS |
| PatternScan: PS00307 IPR019825
|
135-141 | LECTIN_LEGUME_BETA Legume lectin, beta chain, Mn/Ca-binding site
|
VAVELDT |
| Seg: seg | 272-287 | seg | LPKLPRLGPKKKPKVL |
| superfamily: SSF56112 IPR011009
|
314-622 | Protein kinase-like (PK-like) Protein kinase-like domain
|
RKFADVVEDWELEYGPHRFKFKDLYIATKGFKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFLEGDLPFPE |
| Gene3D: G3DSA:3.30.200.20 | 324-408 | no description | ELEYGPHRFKFKDLYIATKGFKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYC |
| ProfileScan: PS50011 IPR000719
|
344-670 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFLEGDLPFPEMSSLSLTSSGLTFGHRQGFDDYVMSYSSSVCKGFSHCSVADSLLSGGR |
| HMMSmart: SM00220 IPR002290
|
344-614 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNLKQGQPCGKVLQFL |
| HMMSmart: SM00219 IPR020635
|
344-601 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FKDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTEDVILVDWVYSCWSNGDIMEAKDPNLGSGYEAEEVELVLKLGCSALTQNL |
| HMMPfam: PF00069 IPR017442
|
345-551 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
KDKELLGAGGFGRVYRGVLPSNKLEVAVKRVSHESRQGMREFVAEIVSIGRLRHRNLVQLLGYCRRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPT |
| PatternScan: PS00107 IPR017441
|
350-373 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGAGGFGRVYRGVLPSNKLEVAVK |
| Gene3D: G3DSA:1.10.510.10 | 409-552 | no description | RRKDELLLVYDYMPNGSLDKYLHDQPKVTLNWRQRFRVIKGVASGLFYLHGEWDQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATPSTDVFAFGAFLLEVACGRRPIEAKSPTE |
| Seg: seg | 624-634 | seg | SSLSLTSSGLT |
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