PRGDB00068441 (Ghi.8729)
| Ghi.8729 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 84164748 (DR453396) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Gossypium hirsutum |
DNA Sequence
CGAGGCTTACAAGTCGGTCTCTGCATGATCATTCTCCTCGAGGTCAACAATCAAGGAAATAGAGCTGAATCAACTTGGAGATGACAATGATGGGAATGAGACCAATTCATCAATGCAATATGAGTTGCAAAAATGCTTGGAGGTGCTCCTGAATACAAATTCATCGGATTGCAGATGGTTTTGTTATGGAATTCTAAAAGCTGCAACTGATCAATTCTCCACAGAGAACTTGATTGGGAAAGGAGGGAGCAACCGTGTCTATAAAGGGATCCTTCCGGATAACAAAGCAGTGGCTGTGAAGATTCTGGAGTCATCAAAAGAGGCATGCAAGGATTTCGCAAATGAAATCGAAATAATCTCCTCACTGAAGCATAAACACATCATGCCTCTAATAGGTATCTGCATTAAAGATCATGATCTTATATCCGTCTATGATTTCTCATCCAAGGGAAGCTTAGAAGAAATTCTGCATGGGAAGAACAAAGGAAAACATGCCTTGCCATGGGAGCTCAGATATAACGTTGCTGTCGGGATTGCTGAAGGCCTAGATTACCTACATAATGAGCTTTCTCGACCTGTTATTCATAGGGATATCAAGTCTTCAAATATTCTTCTTTCAGATGGGTTCGAACCAAAGTTATCTGACTTTGGGTAGCCATATGGGGACAACTGATCGTCATTCTGATTCCACTGATGTTGTGGCACCTCGGGTATTAACTCCTGATATTATGTATGGTACTTACGACAGATGAGTTACCTTCGGGTGTCAACCAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ghi.8729 | translated coding region predicted by ESTScan from UniGene Ghi.8729 | XEAYKSVSAXSFSSRSTIKEIELNQLGDDNDGNETNSSMQYELQKCLEVLLNTNSSDCRWFCYGILKAATDQFSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDIMYGTYDRXVTFGCQPX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 6-16 | seg | SVSAXSFSSRS |
| HMMPanther: PTHR24420:SF425 | 13-218 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | SSRSTIKEIELNQLGDDNDGNETNSSMQYELQKCLEVLLNTNSSDCRWFCYGILKAATDQFSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALG |
| HMMPanther: PTHR24420 | 13-218 | FAMILY NOT NAMED,FAMILY NOT NAMED | SSRSTIKEIELNQLGDDNDGNETNSSMQYELQKCLEVLLNTNSSDCRWFCYGILKAATDQFSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALG |
| superfamily: SSF56112 IPR011009
|
43-241 | Protein kinase-like (PK-like) Protein kinase-like domain
|
LQKCLEVLLNTNSSDCRWFCYGILKAATDQFSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTP |
| Gene3D: G3DSA:3.30.200.20 | 54-133 | no description | NSSDCRWFCYGILKAATDQFSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIG |
| ProfileScan: PS50011 IPR000719
|
73-259 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDIMYGTYDRXVTFGCQPX |
| HMMSmart: SM00219 IPR020635
|
73-254 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDIMYGTYDRXVTF |
| HMMSmart: SM00220 IPR002290
|
73-254 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSTENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDIMYGTYDRXVTF |
| HMMPfam: PF00069 IPR017442
|
75-243 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
TENLIGKGGSNRVYKGILPDNKAVAVKILESSKEACKDFANEIEIISSLKHKHIMPLIGICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDI |
| Gene3D: G3DSA:1.10.510.10 | 134-244 | no description | ICIKDHDLISVYDFSSKGSLEEILHGKNKGKHALPWELRYNVAVGIAEGLDYLHNELSRPVIHRDIKSSNILLSDGFEPKLSALGSHMGTTDRHSDSTDVVAPRVLTPDIM |
| PatternScan: PS00108 IPR008271
|
194-206 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
VIHRDIKSSNILL |
List of Contributions
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