PRGDB00068444 (Ghi.8818)
| Ghi.8818 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 164353189 (ES839144) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Gossypium hirsutum |
DNA Sequence
CTCGCTCAAAGCAAAGAAAGGCGAAAAGAAGCAACttttttttttGGGAGTTAGGTTGAAAATTTGAAGTTTAAGCCAATGGGAGCTCGTTGCTCCAAACTTTCACTTTGCTGGTGGCCGTCAAATCTCAAGTCAAACCTCAACGACTCCTCCGATCTCGAGAATGGGGAGGAAGCGTTACCTGGATTCAGCGAGTACAGCTTGGACCAATTAAGAGCTGCCACAGCAGGTTTCTCAACGGACAACATTGTATCGGAGCATGGAGAAAAAGCTCCCAATGTAGTTTACCGAGGGACCCTCGACGAGGATCGTTTGATTGCTGTTAAACGCTTCAACAGATCGGCTTGGCCTGATCCTCGACAGTTCCTCGAAGAAGCGAGAGCAGTTGGGCACTTAAGAAGCGATCGGTTGGCCAATTTGATTGGTTGTTGCTGTGAAGGAGATGAGAGATTGTTAGTAGCTGAGTTTATGCCTAATGAGACTCTCTCTAAGCATCTTTTCCACTGGGAAAATCAGCATATGAAATGGCCGATGAGGCTGAGAGTCGCATTATATCTAGCACAGGCACTTGAATATTGCAGTAGTAGACGGAGAGCGTTATACCATGACCTTAATGCTTATAGAATCTTGTTTGATCAGGATGGTAATCCCAGACTCTCTAGCTTTGGCCTTATGAAGAACAGCAGAGACGGAAAAAGTTATAGTACAAACTTGGCTTTCACCCCTCCAGAATACCTAAGGACAGGAAGGGTTATCCCGGAGAGTGTGGTTTACAGTTTTGGCACCCTTTTGCTTGATCTTCTCAGTGGCAAGCATATACCACCAAGCCATGCACTGGACCTAATACGGGGAAAAAACTTTTTGATTCTGCTGGACTCATGCCTGGGAGGGTCAATTTTCAAATAATGATGG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ghi.8818 | translated coding region predicted by ESTScan from UniGene Ghi.8818 | MGARCSKLSLCWWPSNLKSNLNDSSDLENGEEALPGFSEYSLDQLRAATAGFSTDNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHXTGPNTGKKLFDSAGLMPGRVNFQIMMX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 15-29 | seg | SNLKSNLNDSSDLEN |
| HMMPanther: PTHR24420:SF457 | 19-251 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | SNLNDSSDLENGEEALPGFSEYSLDQLRAATAGFSTDNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSH |
| HMMPanther: PTHR24420 | 19-251 | FAMILY NOT NAMED,FAMILY NOT NAMED | SNLNDSSDLENGEEALPGFSEYSLDQLRAATAGFSTDNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSH |
| superfamily: SSF56112 IPR011009
|
24-246 | Protein kinase-like (PK-like) Protein kinase-like domain
|
SSDLENGEEALPGFSEYSLDQLRAATAGFSTDNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKH |
| Gene3D: G3DSA:3.30.200.20 | 37-123 | no description | FSEYSLDQLRAATAGFSTDNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDE |
| ProfileScan: PS50011 IPR000719
|
55-279 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
DNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHXTGPNTGKKLFDSAGLMPGRVNFQIMMX |
| HMMSmart: SM00220 IPR002290
|
55-277 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
DNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHXTGPNTGKKLFDSAGLMPGRVNFQIM |
| HMMSmart: SM00219 IPR020635
|
55-278 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
DNIVSEHGEKAPNVVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHXTGPNTGKKLFDSAGLMPGRVNFQIMM |
| HMMPfam: PF07714 IPR001245
|
68-252 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
VVYRGTLDEDRLIAVKRFNRSAWPDPRQFLEEARAVGHLRSDRLANLIGCCCEGDERLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHX |
| Gene3D: G3DSA:1.10.510.10 | 124-248 | no description | RLLVAEFMPNETLSKHLFHWENQHMKWPMRLRVALYLAQALEYCSSRRRALYHDLNAYRILFDQDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIP |
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