PRGDB00068449 (Ghi.8984)

Ghi.8984
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	73865911 (DT468649)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Gossypium hirsutum
	Comment?

GH_CHX22D13.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX22D13 3', mRNA sequence

DNA Sequence

GCGGCCCCCTTATAAGGTTTTTTTATCAAAACAAATGCTAAACTCATTACTTTTGCTGTTTCAAAGGAAAAACTACATATAGGTTTTTGGGAATCCATTGCTGCTTTCAACTGAATATACAAAGTCTTTCTTCTTACTAACTTCCTTTCTGTACTTGACATGTTCTAAAACATTAGAGATGAAAGTACCCTTTACGTGTTCGATCCATCCGAACTATTTTCTGCACTTTGTAGTCTTTTCTCCCTCCAACTCTCCCCCCACATCTTGGCCTCAGCCACCGCTCGTTCCCTGTTAAAATCCCGGTCTAACATCCTGGTTGTTTCCCTCGGAGACTCATTGTTCTCCGGCCCTTTCACACTGACCCTTTTAGCTTCATGTGCGCTATATGGATGGGATGTCAAATAATCAAGAGCAAGCACTATATCACCAATAGAGGGCCTGCAATTTGCATTTTCTTGGATGCATAGGAAGGCCACCTCTAGAGCTTTCTTCATGGTTGACTTGGAGAAGTGACCTCTCAGCAATGGATCCGCTAAGTTCAGAATGTTCATTCCATCTTTCAACATCGGTCGTGCCCAATCAACAAGGAATCGTTCTTCACGAGCACGGCTATCATCAAGAGCTTTACGTCCCGTTATCAGCTCCAATAAGACTACCCCAAAACTAAAGATGTCAGACTTCATAGTCAATTTTCCACTAGTGAGGTACTCAGGGGCACAGTAACCGTGGGTTCCCATGATCCTGGTGGAAACATGTGATTTATCTCCACTCGGACCGAACTTTGCAAGCCCGAAATCAGAGAGTTTTGGGTTGAATCCCTCACCTAATAGTATGTTAGATGACTTTAAATCTCTATATA

Protein sequences

Name	Description	Sequence
Ghi.8984	translated coding region predicted by ESTScan from UniGene Ghi.8984	XYRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLALDYLTSHPYSAHEAKRVSVKGPENNESPRETTRMLDRDFNRERAVAEAKMWGESWREKRLQSAENSSDGSNT

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-160	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XYRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLALDYLTSHPYS
Gene3D: G3DSA:1.10.510.10	2-148	no description	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIV
HMMPanther: PTHR24420:SF700	2-222	SUBFAMILY NOT NAMED	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLALDYLTSHPYSAHEAKRVSVKGPENNESPRETTRMLDRDFNRERAVAEAKMWGESWREKRLQSAENSSDGSNT
HMMPanther: PTHR24420	2-222	FAMILY NOT NAMED,FAMILY NOT NAMED	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLALDYLTSHPYSAHEAKRVSVKGPENNESPRETTRMLDRDFNRERAVAEAKMWGESWREKRLQSAENSSDGSNT
superfamily: SSF56112 IPR011009	2-151	Protein kinase-like (PK-like) Protein kinase-like domain	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLAL
HMMPfam: PF00069 IPR017442	2-147	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDI
HMMSmart: SM00220 IPR002290	2-154	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	YRDLKSSNILLGEGFNPKLSDFGLAKFGPSGDKSHVSTRIMGTHGYCAPEYLTSGKLTMKSDIFSFGVVLLELITGRKALDDSRAREERFLVDWARPMLKDGMNILNLADPLLRGHFSKSTMKKALEVAFLCIQENANCRPSIGDIVLALDYL

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Analyses

Blast

Blast matches against Reference R-Genes. Show