PRGDB00069508 (Gra.3013)
| Gra.3013 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 48785197 (CO090179) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Gossypium raimondii |
DNA Sequence
CTCTTCCAAGAGTGATCAGTGATATTCGTTGGAGGGAGAAAAGATGGACTATGTGTACGGACCAGGAAAGAACCATCTCTTTGTTCCAGGGCCGGTTAACATCCCGGAACCAGTTCTTCGAGCCATGAACAGGAACAATGAGGATTACCGTTCCCCTGCCATTCCTGCCATGACAAAAAATCTTCTTGAAGATGTCAAGAAAATTTTCAAGACTAGTACTGGAACTCCCTTTTTGATTCCAACTACAGGAACTGGTGCatgggagagtgcactcactaataccctgtcccctggagatcgaactgtatcttttctaattggacaattcagtctgctgtggattgatcaacaacaacgcctcaacttcaacgtcgacgttgttgaaagtgagtggggtcaaggtgctaaccttgacattctgGCAGAAAAACTTGCAGCTGATCACTCCCACACAATCAAGGCCATTTGCATTGTTCACAATGAGACTGCAACCGGAGTCACCAACAACCTGGCTACTGTGAGAAAATTACTTGATCATTATAGGCacccagcattacttcttgttgatggagtttcctctattTGTGCCCTTGATTTTCGTATGGATGAGTGGGGAGTAGACGTCGCACTAACCGGTTCTCAGAAGGCACTTTCTCTTCCCACAGGACTGGGTATTGTTTGTGCAAGCCCCAAAGCTTTGGAGGCATCCAAAAGTGCAAAATCAGTTAGAGTTTTCTTCGACTGGAATGACTACCTCAAGTTCTACAAACTGGGAACATTTTGGCCATACACCCCTTCAATCCAGCTATTGTATGGGCTAAGAGCCGCTCTTGATCTTATATTCGAGGAAGGACTCGACAATGTGATTGCAAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Gra.3013 | translated coding region predicted by ESTScan from UniGene Gra.3013 | MDYVYGPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIAX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR21152:SF7 | 1-276 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | MDYVYGPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIA |
| HMMPanther: PTHR21152 | 1-276 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | MDYVYGPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIA |
| superfamily: SSF53383 IPR015424
|
7-276 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
PGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIA |
| HMMPfam: PF00266 IPR000192
|
12-274 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
LFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNV |
| Gene3D: G3DSA:3.40.640.10 IPR015421
|
21-269 | no description Pyridoxal phosphate-dependent transferase, major r
|
PEPVLRAMNRNNEDYRSPAIPAMTKNLLEDVKKIFKTSTGTPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGQGANLDILAEKLAADHSHTIKAICIVHNETATGVTNNLATVRKLLDHYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKSAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEE |
| PatternScan: PS00595 IPR020578
|
192-212 | AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi
|
VDVALTGSQKALSLPTGLGIV |
List of Contributions
There has not been any contribution yet.
