PRGDB00070774 (Mdo.4934)

Mdo.4934
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	55858600 (CV883392)
Gene Class	Unknown
Domain Type
Gene Species	Malus x domestica
	Comment?

Mdlv3_4035j04.y1 Mdlv3 Malus x domestica cDNA clone Mdlv3_4035j04 5' similar to TR:O81248 O81248 ALANINE:GLYOXYLATE AMINOTRANSFERASE ;, mRNA sequence

DNA Sequence

TTCCACTCGTTGCCTTTGGCTTAGGTTCGGCTCAATTTGTGAGCCTGCAGGGAGGTGAAAATGGACTACGTTTATGGACCAGGAAGGAACCACCTCTTTGTTCCAGGCCCGGTCAATATTCCGGAGCCAGTCCTTCGGGCCATGAACAGGAACAATGAGGATTACCGTTCTCCCGCTGTCCCAGCAATGACCAAAACTCTGCTCGAGGATGTGAAGAAGATTTTCAAGACTACATCTGGAACTCCATTTATGATCCCTACCACAGGCACTGGTGCATGGGAGAGTGCACTTACAAACACATTATCTCCTGGAGACCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTACTGTGGATCGATCAGCAGCAGCGCCTTAAGTTCAATGTGGATGTTGTAAAAAGTGATTGGGGCCAAAGTGCCACCCTTGCCGTTCCGGAATCCAAAATTGCACACGATACACCGCACACTATAAAGGCAATATGACTTTGTTCACTAATGAAAAAGCCCACGGAAGTCTAAGACATTTAGGCTAATCTCCATAAAAATACACGGTAACTCACTAGCATCCGGCAATCCACCCCATGCTGATGGAGCTGCATATTTCCCCGCCCCTGAAACTACAAGCTCCCAAACACGCGTCAGATTTACACCTCATCCCACAAGACACCTATCCACTCTGCCACGACGCACCCTATTCCCAAACACAACTCTAAAACTGCCATCACACACATCTCACTTCCAAATATCATTGATCCTGGATCCCATCGACCATCCCATAACACGCATAACTAACTAAAT

Protein sequences

Name	Description	Sequence
Mdo.4934	translated coding region predicted by ESTScan from UniGene Mdo.4934	MDYVYGPGRNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDTPHTIKAIXLCSLMKKPTEV

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF53383 IPR015424	1-134	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	MDYVYGPGRNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDT
HMMPanther: PTHR21152:SF7	1-143	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	MDYVYGPGRNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDTPHTIKAIXL
HMMPanther: PTHR21152	1-143	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	MDYVYGPGRNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDTPHTIKAIXL
HMMPfam: PF00266 IPR000192	12-134	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LFVPGPVNIPEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDT
Gene3D: G3DSA:3.40.640.10 IPR015421	21-142	no description Pyridoxal phosphate-dependent transferase, major r	PEPVLRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGTPFMIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVKSDWGQSATLAVPESKIAHDTPHTIKAIX

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Analyses

Blast

Blast matches against Reference R-Genes. Show